Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
RNF20Q5VTR2 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RNF20Q5VTR2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF20Q5VTR2 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AC105250.1-201ENST00000509378 2057 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AC087481.3-201ENST00000602886 1894 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 SSR4P1-203ENST00000599569 2260 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 MIR1233-2-201ENST00000408138 82 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 MIR1233-1-201ENST00000408722 82 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AL133215.2-201ENST00000609242 977 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AL596442.2-201ENST00000610240 980 ntBASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF20Q5VTR2 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 MTND6P24-201ENST00000440466 518 ntBASIC18.96■□□□□ 0.63
RNF20Q5VTR2 DNAJB3-202ENST00000449667 1266 ntBASIC18.96■□□□□ 0.63
RNF20Q5VTR2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 AC027612.4-201ENST00000605371 583 ntBASIC18.96■□□□□ 0.63
RNF20Q5VTR2 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF20Q5VTR2 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 AC126177.1-201ENST00000547829 2218 ntBASIC18.95■□□□□ 0.62
RNF20Q5VTR2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 AZGP1P1-201ENST00000411909 902 ntBASIC18.95■□□□□ 0.62
RNF20Q5VTR2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 HNRNPUP1-201ENST00000554987 333 ntBASIC18.95■□□□□ 0.62
RNF20Q5VTR2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms