Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 SERBP1P3-201ENST00000459980 809 ntBASIC15.3■□□□□ 0.04
COL28A1Q2UY09 KRT8P13-201ENST00000463294 1010 ntBASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 RNA5SP410-201ENST00000516285 106 ntBASIC15.3■□□□□ 0.04
COL28A1Q2UY09 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 SLC25A47P1-201ENST00000531577 414 ntBASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AC021097.1-201ENST00000607902 574 ntBASIC15.3■□□□□ 0.04
COL28A1Q2UY09 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CLK3P2-201ENST00000427566 1453 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 FO681548.1-201ENST00000455617 1132 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 C2orf69P2-201ENST00000562032 1123 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 AC016629.1-201ENST00000596579 586 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 AL671710.1-201ENST00000610245 2349 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 AC026691.1-201ENST00000602502 2017 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CDC14C-201ENST00000428251 1719 ntBASIC15.29■□□□□ 0.04
COL28A1Q2UY09 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms