Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
PRKDCP78527 RPL8P2-201ENST00000430538 502 ntBASIC11.12□□□□□ -0.63
PRKDCP78527 GCSHP3-201ENST00000431120 391 ntBASIC11.12□□□□□ -0.63
PRKDCP78527 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.12□□□□□ -0.63
PRKDCP78527 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.12□□□□□ -0.63
PRKDCP78527 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 CLUHP2-201ENST00000426660 1303 ntBASIC11.12□□□□□ -0.63
PRKDCP78527 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 MBLAC2-202ENST00000514906 1936 ntBASIC11.12□□□□□ -0.63
PRKDCP78527 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 MRPL22P1-201ENST00000505398 616 ntBASIC11.11□□□□□ -0.63
PRKDCP78527 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC11.11□□□□□ -0.63
PRKDCP78527 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC11.11□□□□□ -0.63
PRKDCP78527 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC11.11□□□□□ -0.63
PRKDCP78527 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 VDAC1P1-201ENST00000439229 848 ntBASIC11.11□□□□□ -0.63
PRKDCP78527 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 HIST2H2BA-201ENST00000412169 381 ntBASIC11.11□□□□□ -0.63
PRKDCP78527 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.11□□□□□ -0.63
PRKDCP78527 CHCHD2P2-201ENST00000503744 321 ntBASIC11.11□□□□□ -0.63
PRKDCP78527 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC021016.3-201ENST00000608367 477 ntBASIC11.11□□□□□ -0.63
PRKDCP78527 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 AC090510.3-201ENST00000615831 821 ntBASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms