Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.07■□□□□ 0
LIM2P55344 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.07■□□□□ 0
LIM2P55344 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.07■□□□□ 0
LIM2P55344 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
LIM2P55344 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIM2P55344 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.07■□□□□ 0
LIM2P55344 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.06■□□□□ 0
LIM2P55344 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.06■□□□□ 0
LIM2P55344 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.06■□□□□ 0
LIM2P55344 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LIM2P55344 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.06■□□□□ 0
LIM2P55344 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LIM2P55344 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.06■□□□□ 0
LIM2P55344 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.06■□□□□ 0
LIM2P55344 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LIM2P55344 CYMP-203ENST00000474680 1263 ntBASIC15.06■□□□□ 0
LIM2P55344 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.06■□□□□ 0
LIM2P55344 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.06■□□□□ 0
LIM2P55344 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.06■□□□□ 0
LIM2P55344 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.06■□□□□ 0
LIM2P55344 AC027796.2-201ENST00000575326 344 ntBASIC15.06■□□□□ 0
LIM2P55344 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.06■□□□□ 0
LIM2P55344 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.06■□□□□ 0
LIM2P55344 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.06■□□□□ 0
LIM2P55344 MIR6069-201ENST00000620069 79 ntBASIC15.06■□□□□ 0
LIM2P55344 AL033527.5-202ENST00000641632 1098 ntBASIC15.06■□□□□ 0
LIM2P55344 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.06■□□□□ 0
LIM2P55344 AC100757.3-201ENST00000622361 1406 ntBASIC15.06■□□□□ 0
LIM2P55344 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.06■□□□□ 0
LIM2P55344 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LIM2P55344 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LIM2P55344 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.05■□□□□ 0
LIM2P55344 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.05■□□□□ 0
LIM2P55344 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
LIM2P55344 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
LIM2P55344 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
LIM2P55344 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LIM2P55344 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LIM2P55344 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.05■□□□□ -0
LIM2P55344 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.05■□□□□ -0
LIM2P55344 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.05■□□□□ -0
LIM2P55344 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
LIM2P55344 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.05■□□□□ -0
LIM2P55344 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.05■□□□□ -0
LIM2P55344 AL390955.2-201ENST00000603032 514 ntBASIC15.05■□□□□ -0
LIM2P55344 AL590560.3-201ENST00000623350 461 ntBASIC15.05■□□□□ -0
LIM2P55344 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.05■□□□□ -0
LIM2P55344 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
LIM2P55344 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
LIM2P55344 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.05■□□□□ -0
LIM2P55344 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.05■□□□□ -0
LIM2P55344 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.05■□□□□ -0
LIM2P55344 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LIM2P55344 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
LIM2P55344 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms