Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 AC126177.1-201ENST00000547829 2218 ntBASIC16.54■□□□□ 0.24
CDH6P55285 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
CDH6P55285 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH6P55285 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CDH6P55285 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CDH6P55285 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 MIR6080-201ENST00000617359 66 ntBASIC16.54■□□□□ 0.24
CDH6P55285 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH6P55285 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CDH6P55285 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH6P55285 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH6P55285 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.53■□□□□ 0.24
CDH6P55285 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 AC104640.1-201ENST00000562617 2109 ntBASIC16.53■□□□□ 0.24
CDH6P55285 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.53■□□□□ 0.24
CDH6P55285 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.53■□□□□ 0.24
CDH6P55285 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 AC105250.1-201ENST00000509378 2057 ntBASIC16.53■□□□□ 0.24
CDH6P55285 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CDH6P55285 AC022532.1-201ENST00000624563 1728 ntBASIC16.53■□□□□ 0.24
CDH6P55285 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 AC013268.4-201ENST00000637413 2228 ntBASIC16.53■□□□□ 0.24
CDH6P55285 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH6P55285 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH6P55285 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.52■□□□□ 0.24
CDH6P55285 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 AC087481.3-201ENST00000602886 1894 ntBASIC16.52■□□□□ 0.24
CDH6P55285 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CDH6P55285 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CDH6P55285 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms