Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 PKD1P6-201ENST00000343738 4769 ntBASIC20.42■□□□□ 0.86
COL18A1P39060 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC20.42■□□□□ 0.86
COL18A1P39060 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
COL18A1P39060 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.42■□□□□ 0.86
COL18A1P39060 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC20.42■□□□□ 0.86
COL18A1P39060 RPS15-201ENST00000233609 534 ntTSL 2 BASIC20.41■□□□□ 0.86
COL18A1P39060 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 DPM3-202ENST00000368399 517 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 RN7SKP175-201ENST00000408472 289 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
COL18A1P39060 EEF1DP6-201ENST00000449232 372 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC20.41■□□□□ 0.86
COL18A1P39060 CSH2-206ENST00000560142 749 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC20.41■□□□□ 0.86
COL18A1P39060 MIR5572-201ENST00000583188 137 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 RPS15-205ENST00000586686 562 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 RPS15-208ENST00000591804 711 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC138466.3-201ENST00000619983 221 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.41■□□□□ 0.86
COL18A1P39060 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 KRT8P4-201ENST00000509735 1454 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC253536.4-201ENST00000440539 267 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 MARK2P5-201ENST00000507649 634 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC20.41■□□□□ 0.86
COL18A1P39060 AC103988.2-201ENST00000561804 725 ntBASIC20.41■□□□□ 0.86
COL18A1P39060 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL18A1P39060 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC20.4■□□□□ 0.86
COL18A1P39060 AC092978.1-202ENST00000637590 1327 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.4■□□□□ 0.86
COL18A1P39060 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
COL18A1P39060 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC20.4■□□□□ 0.86
COL18A1P39060 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.4■□□□□ 0.86
COL18A1P39060 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 ATP6V0CP2-201ENST00000469409 207 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC20.4■□□□□ 0.86
COL18A1P39060 AC024681.1-201ENST00000521917 487 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC20.4■□□□□ 0.86
COL18A1P39060 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC20.4■□□□□ 0.86
COL18A1P39060 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC20.4■□□□□ 0.86
COL18A1P39060 BNIP3P13-201ENST00000599968 566 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 U62317.3-201ENST00000608319 855 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 PCBP2-OT1-201ENST00000634357 590 ntBASIC20.4■□□□□ 0.86
COL18A1P39060 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.4■□□□□ 0.86
COL18A1P39060 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
COL18A1P39060 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.4■□□□□ 0.86
COL18A1P39060 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL18A1P39060 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL18A1P39060 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL18A1P39060 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.39■□□□□ 0.86
COL18A1P39060 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL18A1P39060 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC20.39■□□□□ 0.86
COL18A1P39060 PDIA3P2-201ENST00000428073 158 ntBASIC20.39■□□□□ 0.86
COL18A1P39060 LDHBP1-201ENST00000455730 1119 ntBASIC20.39■□□□□ 0.86
COL18A1P39060 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC20.39■□□□□ 0.86
COL18A1P39060 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC20.39■□□□□ 0.86
COL18A1P39060 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC20.39■□□□□ 0.86
COL18A1P39060 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC20.39■□□□□ 0.86
COL18A1P39060 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC20.39■□□□□ 0.86
COL18A1P39060 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC20.39■□□□□ 0.86
COL18A1P39060 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.39■□□□□ 0.85
COL18A1P39060 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms