Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A5P29400 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A5P29400 IQSEC3P1-201ENST00000538799 536 ntBASIC18.62■□□□□ 0.57
COL4A5P29400 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A5P29400 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A5P29400 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A5P29400 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A5P29400 AC006480.2-201ENST00000609770 1337 ntBASIC18.61■□□□□ 0.57
COL4A5P29400 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A5P29400 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A5P29400 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A5P29400 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A5P29400 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL4A5P29400 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A5P29400 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL4A5P29400 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.61■□□□□ 0.57
COL4A5P29400 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A5P29400 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A5P29400 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A5P29400 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A5P29400 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A5P29400 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL4A5P29400 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A5P29400 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 RNMTL1P1-201ENST00000454103 560 ntBASIC18.6■□□□□ 0.57
COL4A5P29400 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A5P29400 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A5P29400 AC007787.1-201ENST00000588095 1583 ntBASIC18.6■□□□□ 0.57
COL4A5P29400 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL4A5P29400 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL4A5P29400 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A5P29400 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.6■□□□□ 0.57
COL4A5P29400 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A5P29400 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A5P29400 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A5P29400 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A5P29400 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A5P29400 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL4A5P29400 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL4A5P29400 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 AC080080.1-201ENST00000625121 2420 ntBASIC18.59■□□□□ 0.57
COL4A5P29400 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A5P29400 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.59■□□□□ 0.57
COL4A5P29400 AL355334.1-201ENST00000417713 215 ntBASIC18.59■□□□□ 0.57
COL4A5P29400 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A5P29400 AGGF1P2-201ENST00000426656 2106 ntBASIC18.59■□□□□ 0.57
COL4A5P29400 GHSR-202ENST00000427970 912 ntBASIC18.59■□□□□ 0.57
COL4A5P29400 CEP164P1-201ENST00000455142 418 ntBASIC18.59■□□□□ 0.57
COL4A5P29400 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A5P29400 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.59■□□□□ 0.57
COL4A5P29400 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.59■□□□□ 0.57
COL4A5P29400 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.59■□□□□ 0.57
COL4A5P29400 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL4A5P29400 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A5P29400 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A5P29400 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.59■□□□□ 0.57
COL4A5P29400 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL4A5P29400 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.58■□□□□ 0.57
COL4A5P29400 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.58■□□□□ 0.57
COL4A5P29400 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms