Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 PRAL-201ENST00000624952 3286 ntBASIC14.65□□□□□ -0.06
ABCD3P28288 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
ABCD3P28288 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
ABCD3P28288 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCD3P28288 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCD3P28288 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
ABCD3P28288 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.07
ABCD3P28288 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCD3P28288 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 BTBD7P1-201ENST00000447253 1453 ntBASIC14.64□□□□□ -0.07
ABCD3P28288 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 MRPS18AP1-201ENST00000414458 589 ntBASIC14.64□□□□□ -0.07
ABCD3P28288 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCD3P28288 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCD3P28288 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCD3P28288 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.64□□□□□ -0.07
ABCD3P28288 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.64□□□□□ -0.07
ABCD3P28288 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCD3P28288 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCD3P28288 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 AP005117.1-202ENST00000581724 1908 ntBASIC14.64□□□□□ -0.07
ABCD3P28288 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCD3P28288 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 Z97205.2-201ENST00000564697 1639 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
ABCD3P28288 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 AC022188.1-201ENST00000620960 1664 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 AC136604.1-201ENST00000418535 575 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 UGT1A2P-201ENST00000454886 866 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCD3P28288 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.63□□□□□ -0.07
ABCD3P28288 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCD3P28288 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCD3P28288 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.63□□□□□ -0.07
ABCD3P28288 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCD3P28288 AC097359.3-201ENST00000603982 1210 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 AC074044.1-201ENST00000609673 707 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 AC008738.7-201ENST00000609744 511 ntBASIC14.63□□□□□ -0.07
ABCD3P28288 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCD3P28288 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCD3P28288 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCD3P28288 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms