Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC008894.3-201ENST00000624324 3103 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 FAM86LP-201ENST00000478302 853 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 ENPP7P5-201ENST00000541031 1031 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC010328.2-201ENST00000597698 1111 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 FLJ38576-201ENST00000623820 2459 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 AC005622.1-201ENST00000636801 1703 ntBASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMD1Q9UGP4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 U82695.1-201ENST00000635752 1889 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 MIR1247-201ENST00000408206 136 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 GPAA1P2-201ENST00000417923 928 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AP002490.2-201ENST00000524791 560 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AC068587.3-201ENST00000526613 355 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AP000812.2-201ENST00000538934 718 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 MIR4321-201ENST00000592276 80 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 PCDH8P1-201ENST00000428983 2773 ntBASIC16.55■□□□□ 0.24
LIMD1Q9UGP4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 NFIC-211ENST00000641145 8399 ntBASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 GGT4P-201ENST00000623672 1708 ntBASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LIMD1Q9UGP4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms