Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AC123567.1-201ENST00000548294 1261 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AL158212.4-201ENST00000624062 1286 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AC063926.2-201ENST00000623766 1308 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AL662844.4-201ENST00000606367 2838 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 AL442647.2-201ENST00000429864 857 ntBASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP4AQ9BY43 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 AP006294.1-201ENST00000415407 339 ntBASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 AL596325.1-201ENST00000563991 1082 ntBASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 CHCHD2P3-201ENST00000603038 451 ntBASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 AC004790.1-201ENST00000612686 536 ntBASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 AC084018.2-201ENST00000613093 2607 ntBASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP4AQ9BY43 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP4AQ9BY43 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms