Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
IFT140Q96RY7 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC004066.1-201ENST00000502488 802 ntBASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
IFT140Q96RY7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
IFT140Q96RY7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC25.58■■□□□ 1.69
IFT140Q96RY7 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC25.58■■□□□ 1.68
IFT140Q96RY7 AP000593.2-201ENST00000542775 1433 ntBASIC25.58■■□□□ 1.68
IFT140Q96RY7 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC25.58■■□□□ 1.68
IFT140Q96RY7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.68
IFT140Q96RY7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
IFT140Q96RY7 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AL139008.1-201ENST00000437894 228 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 RPL7P35-201ENST00000446943 740 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AC022616.1-201ENST00000518688 554 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 MIR4683-201ENST00000579659 81 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 MIR4313-201ENST00000580760 101 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 RPL17P45-201ENST00000586289 509 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
IFT140Q96RY7 AC087289.5-201ENST00000586076 3175 ntBASIC25.57■■□□□ 1.68
IFT140Q96RY7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
IFT140Q96RY7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 AC011477.6-201ENST00000604980 1927 ntBASIC25.56■■□□□ 1.68
IFT140Q96RY7 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 RN7SKP175-201ENST00000408472 289 ntBASIC25.56■■□□□ 1.68
IFT140Q96RY7 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 RN7SL67P-201ENST00000492147 296 ntBASIC25.56■■□□□ 1.68
IFT140Q96RY7 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 MEG3_2.1-201ENST00000611456 105 ntBASIC25.56■■□□□ 1.68
IFT140Q96RY7 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC25.56■■□□□ 1.68
IFT140Q96RY7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
IFT140Q96RY7 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 AC010141.1-201ENST00000411585 623 ntBASIC25.55■■□□□ 1.68
IFT140Q96RY7 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 PAM16-211ENST00000575848 518 ntTSL 3 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 AC004466.1-201ENST00000599515 1080 ntBASIC25.55■■□□□ 1.68
IFT140Q96RY7 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
IFT140Q96RY7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
IFT140Q96RY7 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC25.54■■□□□ 1.68
IFT140Q96RY7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
IFT140Q96RY7 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
IFT140Q96RY7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
IFT140Q96RY7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC25.54■■□□□ 1.68
IFT140Q96RY7 OR2K2-202ENST00000374428 1038 ntBASIC25.54■■□□□ 1.68
IFT140Q96RY7 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms