Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 EDF1-203ENST00000371649 790 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 FAM220BP-201ENST00000377689 816 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC079776.1-201ENST00000401540 1152 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC005412.3-201ENST00000580309 715 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC098850.1-201ENST00000419919 790 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 RARRES2P9-201ENST00000565168 469 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 TEX48-202ENST00000612244 662 ntTSL 3 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MIR6787-201ENST00000616675 61 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 GATB-213ENST00000515812 1893 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TMEM14DP-201ENST00000422205 345 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MIR4453-201ENST00000584019 89 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TEX28P1-201ENST00000613479 1221 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TEX28P2-201ENST00000617764 1221 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RIPK4-202ENST00000352483 4016 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CDK4-206ENST00000549606 558 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC044860.1-202ENST00000559481 777 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PAM16-204ENST00000571941 674 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MIR4525-201ENST00000580000 75 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 LINC02228-204ENST00000642115 2962 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC087499.5-201ENST00000452760 1342 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC087499.6-201ENST00000411576 835 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms