Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.522e-9■□□□□ 9.9
LIN28BQ6ZN17 STRIP1-205ENST00000485775 3363 ntTSL 1 (best)11.1□□□□□ -0.633e-7■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-209ENST00000548249 2061 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.693e-7■□□□□ 9.9
LIN28BQ6ZN17 STRIP1-201ENST00000369795 3265 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.693e-7■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-219ENST00000550988 795 ntTSL 410.7□□□□□ -0.73e-7■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-202ENST00000543672 1321 ntAPPRIS ALT1 TSL 5 BASIC10.46□□□□□ -0.733e-7■□□□□ 9.9
LIN28BQ6ZN17 TRPM7-207ENST00000560955 7218 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.823e-7■□□□□ 9.9
LIN28BQ6ZN17 STRIP1-202ENST00000369796 3125 ntTSL 2 BASIC9.57□□□□□ -0.883e-7■□□□□ 9.9
LIN28BQ6ZN17 STRIP1-204ENST00000473429 4870 ntTSL 29.42□□□□□ -0.93e-7■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-224ENST00000552390 842 ntTSL 59.28□□□□□ -0.923e-7■□□□□ 9.9
LIN28BQ6ZN17 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.973e-7■□□□□ 9.9
LIN28BQ6ZN17 MARCH6-207ENST00000507863 582 ntTSL 48.59□□□□□ -1.032e-9■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-214ENST00000550086 384 ntTSL 58.13□□□□□ -1.113e-7■□□□□ 9.9
LIN28BQ6ZN17 MTHFD1L-212ENST00000618312 3159 ntTSL 5 BASIC7.94□□□□□ -1.143e-7■□□□□ 9.9
LIN28BQ6ZN17 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.23e-7■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.53□□□□□ -1.24e-6■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-205ENST00000546758 817 ntTSL 56.97□□□□□ -1.293e-7■□□□□ 9.9
LIN28BQ6ZN17 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.343e-7■□□□□ 9.9
LIN28BQ6ZN17 SRSF4-207ENST00000622143 614 ntTSL 25.81□□□□□ -1.483e-7■□□□□ 9.9
LIN28BQ6ZN17 CSE1L-203ENST00000469700 1401 ntTSL 1 (best)5.34□□□□□ -1.556e-6■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.91□□□□□ -1.624e-6■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.41□□□□□ -1.864e-6■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.874e-6■□□□□ 9.9
LIN28BQ6ZN17 SRSF4-203ENST00000477193 206 ntTSL 23.26□□□□□ -1.893e-7■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.25□□□□□ -1.894e-6■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.14□□□□□ -1.914e-6■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.924e-6■□□□□ 9.9
LIN28BQ6ZN17 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.91□□□□□ -1.942e-9■□□□□ 9.9
LIN28BQ6ZN17 PANK3-202ENST00000520504 313 ntTSL 52.75□□□□□ -1.972e-9■□□□□ 9.9
LIN28BQ6ZN17 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.32□□□□□ -2.044e-6■□□□□ 9.9
LIN28BQ6ZN17 CNOT1-214ENST00000568917 1317 ntTSL 59.72□□□□□ -0.852e-6■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-203ENST00000467223 627 ntTSL 522.17■■□□□ 1.144e-8■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-202ENST00000411929 574 ntTSL 218.19■□□□□ 0.54e-8■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-206ENST00000485520 3185 ntTSL 511.42□□□□□ -0.584e-8■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-201ENST00000245787 2590 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.964e-8■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-204ENST00000471186 2100 ntTSL 58.3□□□□□ -1.084e-8■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.19□□□□□ -1.584e-8■□□□□ 9.9
LIN28BQ6ZN17 INSIG2-207ENST00000488995 518 ntTSL 33.29□□□□□ -1.884e-8■□□□□ 9.9
LIN28BQ6ZN17 SLC13A5-205ENST00000572094 986 ntTSL 517.27■□□□□ 0.363e-8■□□□□ 9.9
LIN28BQ6ZN17 SLC13A5-207ENST00000572727 618 ntTSL 216.15■□□□□ 0.183e-8■□□□□ 9.9
LIN28BQ6ZN17 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.12■□□□□ 0.173e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.31■□□□□ 0.043e-8■□□□□ 9.9
LIN28BQ6ZN17 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.96□□□□□ -0.013e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.92□□□□□ -0.023e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-204ENST00000562118 952 ntTSL 214.86□□□□□ -0.033e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.193e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-209ENST00000566510 2661 ntTSL 513.71□□□□□ -0.213e-8■□□□□ 9.9
LIN28BQ6ZN17 SLC13A5-210ENST00000574824 2506 ntTSL 213.06□□□□□ -0.323e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-212ENST00000611625 4878 ntTSL 5 BASIC11.86□□□□□ -0.513e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-210ENST00000566612 4138 ntTSL 1 (best)11.39□□□□□ -0.593e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-214ENST00000621016 3304 ntTSL 5 BASIC10.34□□□□□ -0.753e-8■□□□□ 9.9
LIN28BQ6ZN17 CDH1-205ENST00000562836 2759 ntTSL 1 (best)8.1□□□□□ -1.113e-8■□□□□ 9.9
LIN28BQ6ZN17 RPL4-210ENST00000566039 1099 ntTSL 210.09□□□□□ -0.791e-9■□□□□ 9.9
LIN28BQ6ZN17 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.29■■□□□ 1.166e-9■□□□□ 9.9
LIN28BQ6ZN17 HIST1H2AC-201ENST00000314088 1668 ntTSL 1 (best)17.85■□□□□ 0.451e-19■□□□□ 9.9
LIN28BQ6ZN17 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.451e-19■□□□□ 9.9
LIN28BQ6ZN17 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.411e-19■□□□□ 9.9
LIN28BQ6ZN17 RRBP1-209ENST00000495501 832 ntTSL 522.9■■□□□ 1.261e-15■□□□□ 9.8
LIN28BQ6ZN17 CLU-207ENST00000520796 737 ntTSL 520.97■□□□□ 0.958e-10■□□□□ 9.8
LIN28BQ6ZN17 CLU-205ENST00000519742 583 ntTSL 319.9■□□□□ 0.788e-10■□□□□ 9.8
LIN28BQ6ZN17 CLU-216ENST00000523589 878 ntTSL 318.61■□□□□ 0.578e-10■□□□□ 9.8
LIN28BQ6ZN17 CLU-206ENST00000520491 580 ntTSL 318.41■□□□□ 0.548e-10■□□□□ 9.8
LIN28BQ6ZN17 CLU-212ENST00000522413 654 ntTSL 317.19■□□□□ 0.348e-10■□□□□ 9.8
LIN28BQ6ZN17 CLU-217ENST00000560566 1039 ntTSL 414.92□□□□□ -0.028e-10■□□□□ 9.8
LIN28BQ6ZN17 TGFBI-213ENST00000514554 1691 ntTSL 516.38■□□□□ 0.218e-8■□□□□ 9.8
LIN28BQ6ZN17 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.34■□□□□ 0.211e-17■□□□□ 9.8
LIN28BQ6ZN17 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.081e-17■□□□□ 9.8
LIN28BQ6ZN17 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-17■□□□□ 9.8
LIN28BQ6ZN17 LSS-210ENST00000491729 2143 ntTSL 213.76□□□□□ -0.211e-17■□□□□ 9.8
LIN28BQ6ZN17 LSS-203ENST00000419093 517 ntTSL 310.66□□□□□ -0.71e-17■□□□□ 9.8
LIN28BQ6ZN17 LSS-208ENST00000474319 3601 ntTSL 210.58□□□□□ -0.721e-17■□□□□ 9.8
LIN28BQ6ZN17 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.97■■□□□ 1.751e-6■□□□□ 9.8
LIN28BQ6ZN17 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.391e-6■□□□□ 9.8
LIN28BQ6ZN17 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.98■■□□□ 1.111e-6■□□□□ 9.8
LIN28BQ6ZN17 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.9■□□□□ 0.941e-6■□□□□ 9.8
LIN28BQ6ZN17 FOSL1-205ENST00000534222 584 ntTSL 315.42■□□□□ 0.061e-6■□□□□ 9.8
LIN28BQ6ZN17 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.59■□□□□ 0.731e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.14■□□□□ 0.651e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.631e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.21e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-216ENST00000550184 1564 ntTSL 516.3■□□□□ 0.21e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.041e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-215ENST00000549566 685 ntTSL 2 BASIC14.53□□□□□ -0.081e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-212ENST00000548725 582 ntTSL 214.22□□□□□ -0.131e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-210ENST00000548400 573 ntTSL 3 BASIC14.19□□□□□ -0.141e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-208ENST00000547703 675 ntTSL 513.91□□□□□ -0.181e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-217ENST00000550639 419 ntTSL 510.63□□□□□ -0.711e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-206ENST00000547408 683 ntTSL 3 BASIC10.51□□□□□ -0.731e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.771e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-214ENST00000549392 411 ntTSL 510.07□□□□□ -0.81e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC8.9□□□□□ -0.981e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-211ENST00000548580 528 ntTSL 2 BASIC8.12□□□□□ -1.111e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-221ENST00000552297 454 ntTSL 37.61□□□□□ -1.191e-13■□□□□ 9.8
LIN28BQ6ZN17 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.68□□□□□ -1.341e-13■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-212ENST00000566617 572 ntTSL 431.57■■■□□ 2.643e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.473e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.13■■□□□ 1.453e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-205ENST00000563774 566 ntTSL 422.45■■□□□ 1.183e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.183e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-214ENST00000567266 546 ntTSL 422.42■■□□□ 1.183e-10■□□□□ 9.8
Retrieved 100 of 21,972 protein–RNA pairs in 577.5 ms