RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 NISCHQ9Y2I1 1504 aa21.05■□□□□ 0.96
CDH1-214ENST00000621016 SHROOM4Q9ULL8 1493 aa18.86■□□□□ 0.61
CDH1-214ENST00000621016 SUPT5HO00267 1087 aaKnown RBP18.59■□□□□ 0.57
CDH1-214ENST00000621016 DCAF8L2P0C7V8 631 aa18.54■□□□□ 0.56
CDH1-214ENST00000621016 PELP1Q8IZL8 1130 aaKnown RBP17.97■□□□□ 0.47
CDH1-214ENST00000621016 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
CDH1-214ENST00000621016 CHIC1Q5VXU3 224 aa17.71■□□□□ 0.43
CDH1-214ENST00000621016 PPARGC1BQ86YN6 1023 aaKnown RBP17.67■□□□□ 0.42
CDH1-214ENST00000621016 PCGF6Q9BYE7 350 aa17.58■□□□□ 0.41
CDH1-214ENST00000621016 MYO15BQ96JP2 1530 aa17.55■□□□□ 0.4
CDH1-214ENST00000621016 HRCP23327 699 aa17.52■□□□□ 0.4
CDH1-214ENST00000621016 LOC105371045A0A1W2PR82 267 aa17.51■□□□□ 0.39
CDH1-214ENST00000621016 EHMT2Q96KQ7 1210 aa17.46■□□□□ 0.39
CDH1-214ENST00000621016 CCDC180Q9P1Z9 1646 aa17.44■□□□□ 0.38
CDH1-214ENST00000621016 MYT1Q01538 1121 aa17.39■□□□□ 0.37
CDH1-214ENST00000621016 FAM9AQ8IZU1 332 aaPredicted RBP17.31■□□□□ 0.36
CDH1-214ENST00000621016 SCAF1Q9H7N4 1312 aaKnown RBP17.28■□□□□ 0.36
CDH1-214ENST00000621016 TRIM41Q8WV44 630 aa17.08■□□□□ 0.33
CDH1-214ENST00000621016 SCRIBQ14160 1630 aa16.98■□□□□ 0.31
CDH1-214ENST00000621016 ABCC9O60706 1549 aa16.95■□□□□ 0.3
CDH1-214ENST00000621016 TRIM26Q12899 539 aaPredicted RBP16.89■□□□□ 0.29
CDH1-214ENST00000621016 DCAF1Q9Y4B6 1507 aa16.89■□□□□ 0.29
CDH1-214ENST00000621016 RSF1Q96T23 1441 aaPredicted RBP16.86■□□□□ 0.29
CDH1-214ENST00000621016 TTBK1Q5TCY1 1321 aaPredicted RBP16.84■□□□□ 0.29
CDH1-214ENST00000621016 PRKCSHP14314 528 aaPredicted RBP16.8■□□□□ 0.28
CDH1-214ENST00000621016 BCL11AQ9H165 835 aa16.76■□□□□ 0.27
CDH1-214ENST00000621016 CECR2Q9BXF3 1484 aa16.7■□□□□ 0.26
CDH1-214ENST00000621016 RB1CC1Q8TDY2 1594 aa16.67■□□□□ 0.26
CDH1-214ENST00000621016 GTF3C3Q9Y5Q9 886 aa16.61■□□□□ 0.25
CDH1-214ENST00000621016 NEUROD1Q13562 356 aa16.55■□□□□ 0.24
CDH1-214ENST00000621016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.53■□□□□ 0.24
CDH1-214ENST00000621016 MROH2BQ7Z745 1585 aa16.52■□□□□ 0.24
CDH1-214ENST00000621016 PABPN1Q86U42 306 aaKnown RBP eCLIP16.52■□□□□ 0.23
CDH1-214ENST00000621016 RANGAP1P46060 587 aaPredicted RBP16.44■□□□□ 0.22
CDH1-214ENST00000621016 CCER1Q8TC90 406 aaPredicted RBP16.44■□□□□ 0.22
CDH1-214ENST00000621016 ACIN1Q9UKV3 1341 aaKnown RBP16.44■□□□□ 0.22
CDH1-214ENST00000621016 ZEB1P37275 1124 aaPredicted RBP16.41■□□□□ 0.22
CDH1-214ENST00000621016 WIZO95785 1651 aa16.41■□□□□ 0.22
CDH1-214ENST00000621016 UBTFP17480 764 aaKnown RBP16.39■□□□□ 0.21
CDH1-214ENST00000621016 CENPBP07199 599 aaPredicted RBP16.33■□□□□ 0.2
CDH1-214ENST00000621016 NACADO15069 1562 aa16.33■□□□□ 0.2
CDH1-214ENST00000621016 ABCC8Q09428 1581 aa16.25■□□□□ 0.19
CDH1-214ENST00000621016 CCDC88BA6NC98 1476 aa16.2■□□□□ 0.18
CDH1-214ENST00000621016 SOGA1O94964 1423 aa16.18■□□□□ 0.18
CDH1-214ENST00000621016 HNRNPUL2Q1KMD3 747 aaKnown RBP16.16■□□□□ 0.18
CDH1-214ENST00000621016 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
CDH1-214ENST00000621016 YTHDC1Q96MU7 727 aaKnown RBP16.14■□□□□ 0.17
CDH1-214ENST00000621016 BAZ1AQ9NRL2 1556 aaPredicted RBP16.12■□□□□ 0.17
CDH1-214ENST00000621016 RUSC2Q8N2Y8 1516 aa16.1■□□□□ 0.17
CDH1-214ENST00000621016 CEP162Q5TB80 1403 aa16.06■□□□□ 0.16
CDH1-214ENST00000621016 DIEXFQ68CQ4 756 aaKnown RBP16.04■□□□□ 0.16
CDH1-214ENST00000621016 ERICH6Q7L0X2 663 aa16.02■□□□□ 0.15
CDH1-214ENST00000621016 APLP2Q06481 763 aa15.99■□□□□ 0.15
CDH1-214ENST00000621016 ANP32EQ9BTT0 268 aa15.99■□□□□ 0.15
CDH1-214ENST00000621016 TOP2AP11388 1531 aaKnown RBP15.96■□□□□ 0.14
CDH1-214ENST00000621016 SMARCA4P51532 1647 aa15.96■□□□□ 0.14
CDH1-214ENST00000621016 SMARCA2P51531 1590 aa15.93■□□□□ 0.14
CDH1-214ENST00000621016 TNIKQ9UKE5 1360 aa15.89■□□□□ 0.13
CDH1-214ENST00000621016 WRNQ14191 1432 aaPredicted RBP eCLIP15.89■□□□□ 0.13
CDH1-214ENST00000621016 ITGAEP38570 1179 aa15.85■□□□□ 0.13
CDH1-214ENST00000621016 EIF4G1Q04637 1599 aaKnown RBP15.83■□□□□ 0.12
CDH1-214ENST00000621016 ANO8Q9HCE9 1232 aaPredicted RBP15.82■□□□□ 0.12
CDH1-214ENST00000621016 GOLGA3Q08378 1498 aa15.79■□□□□ 0.12
CDH1-214ENST00000621016 ZNF316A6NFI3 1004 aaPredicted RBP15.79■□□□□ 0.12
CDH1-214ENST00000621016 CLIP1P30622 1438 aa15.78■□□□□ 0.12
CDH1-214ENST00000621016 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
CDH1-214ENST00000621016 MIER1Q8N108 512 aa15.72■□□□□ 0.11
CDH1-214ENST00000621016 ATP1B4Q9UN42 357 aaPredicted RBP15.72■□□□□ 0.11
CDH1-214ENST00000621016 BAZ1BQ9UIG0 1483 aaKnown RBP15.72■□□□□ 0.11
CDH1-214ENST00000621016 EEA1Q15075 1411 aa15.71■□□□□ 0.1
CDH1-214ENST00000621016 RAPGEF2Q9Y4G8 1499 aa15.7■□□□□ 0.1
CDH1-214ENST00000621016 BICRAQ9NZM4 1560 aa15.69■□□□□ 0.1
CDH1-214ENST00000621016 SYNJ1O43426 1573 aa15.68■□□□□ 0.1
CDH1-214ENST00000621016 ATAD2BQ9ULI0 1458 aa15.67■□□□□ 0.1
CDH1-214ENST00000621016 CCDC136Q96JN2 1154 aa15.67■□□□□ 0.1
CDH1-214ENST00000621016 CEP164Q9UPV0 1460 aa15.66■□□□□ 0.1
CDH1-214ENST00000621016 KANK4Q5T7N3 995 aaPredicted RBP15.65■□□□□ 0.1
CDH1-214ENST00000621016 P3H3Q8IVL6 736 aa15.62■□□□□ 0.09
CDH1-214ENST00000621016 TSHZ2Q9NRE2 1034 aa15.58■□□□□ 0.08
CDH1-214ENST00000621016 VPS8Q8N3P4 1428 aa15.57■□□□□ 0.08
CDH1-214ENST00000621016 FAM50AQ14320 339 aaKnown RBP15.48■□□□□ 0.07
CDH1-214ENST00000621016 BCANQ96GW7 911 aa15.48■□□□□ 0.07
CDH1-214ENST00000621016 SALL2Q9Y467 1007 aaPredicted RBP15.47■□□□□ 0.07
CDH1-214ENST00000621016 KIF21BO75037 1637 aa15.46■□□□□ 0.06
CDH1-214ENST00000621016 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.42■□□□□ 0.06
CDH1-214ENST00000621016 HIRIP3Q9BW71 556 aaPredicted RBP15.42■□□□□ 0.06
CDH1-214ENST00000621016 SUPT16HQ9Y5B9 1047 aaKnown RBP15.39■□□□□ 0.05
CDH1-214ENST00000621016 PEG3Q9GZU2 1588 aa15.38■□□□□ 0.05
CDH1-214ENST00000621016 KIF27Q86VH2 1401 aa15.38■□□□□ 0.05
CDH1-214ENST00000621016 ARAP1Q96P48 1450 aa15.38■□□□□ 0.05
CDH1-214ENST00000621016 PLEKHG5O94827 1062 aa15.36■□□□□ 0.05
CDH1-214ENST00000621016 DHX57Q6P158 1386 aaKnown RBP15.36■□□□□ 0.05
CDH1-214ENST00000621016 SIN3AQ96ST3 1273 aa15.34■□□□□ 0.05
CDH1-214ENST00000621016 KCNH8Q96L42 1107 aa15.33■□□□□ 0.04
CDH1-214ENST00000621016 CUX2O14529 1486 aa15.32■□□□□ 0.04
CDH1-214ENST00000621016 RTN4Q9NQC3 1192 aaKnown RBP15.32■□□□□ 0.04
CDH1-214ENST00000621016 CUX1P39880 1505 aa15.32■□□□□ 0.04
CDH1-214ENST00000621016 TOP2BQ02880 1626 aa15.32■□□□□ 0.04
CDH1-214ENST00000621016 PRXQ9BXM0 1461 aa15.3■□□□□ 0.04
CDH1-214ENST00000621016 CCNB3Q8WWL7 1395 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms