RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
CDH1-205ENST00000562836 MYT1Q01538 1121 aa17.18■□□□□ 0.34
CDH1-205ENST00000562836 SLC24A1O60721 1099 aa16.87■□□□□ 0.29
CDH1-205ENST00000562836 PRKCSHP14314 528 aaPredicted RBP16.79■□□□□ 0.28
CDH1-205ENST00000562836 TTBK1Q5TCY1 1321 aaPredicted RBP16.64■□□□□ 0.25
CDH1-205ENST00000562836 APLP2Q06481 763 aa16.27■□□□□ 0.2
CDH1-205ENST00000562836 ERICH6Q7L0X2 663 aa16.22■□□□□ 0.19
CDH1-205ENST00000562836 BCL11AQ9H165 835 aa15.96■□□□□ 0.15
CDH1-205ENST00000562836 DAXXQ9UER7 740 aaPredicted RBP15.86■□□□□ 0.13
CDH1-205ENST00000562836 FAM9AQ8IZU1 332 aaPredicted RBP15.78■□□□□ 0.12
CDH1-205ENST00000562836 SCAF1Q9H7N4 1312 aaKnown RBP15.55■□□□□ 0.08
CDH1-205ENST00000562836 EIF5BO60841 1220 aaKnown RBP15.46■□□□□ 0.07
CDH1-205ENST00000562836 HRCP23327 699 aa15.36■□□□□ 0.05
CDH1-205ENST00000562836 PLEKHG5O94827 1062 aa15.32■□□□□ 0.04
CDH1-205ENST00000562836 PPARGC1BQ86YN6 1023 aaKnown RBP15.09■□□□□ 0.01
CDH1-205ENST00000562836 NISCHQ9Y2I1 1504 aa15.07■□□□□ 0
CDH1-205ENST00000562836 CENPBP07199 599 aaPredicted RBP15.05■□□□□ 0
CDH1-205ENST00000562836 PODXL2Q9NZ53 605 aa14.87□□□□□ -0.03
CDH1-205ENST00000562836 ANO8Q9HCE9 1232 aaPredicted RBP14.83□□□□□ -0.04
CDH1-205ENST00000562836 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
CDH1-205ENST00000562836 UBE2Q2Q8WVN8 375 aa14.79□□□□□ -0.04
CDH1-205ENST00000562836 ANP32EQ9BTT0 268 aa14.74□□□□□ -0.05
CDH1-205ENST00000562836 PLPPR3Q6T4P5 718 aa14.72□□□□□ -0.05
CDH1-205ENST00000562836 KLHL34Q8N239 644 aa14.72□□□□□ -0.05
CDH1-205ENST00000562836 CSRNP3Q8WYN3 585 aa14.7□□□□□ -0.06
CDH1-205ENST00000562836 EHMT2Q96KQ7 1210 aa14.68□□□□□ -0.06
CDH1-205ENST00000562836 AEBP2Q6ZN18 517 aaPredicted RBP14.63□□□□□ -0.07
CDH1-205ENST00000562836 GTF3C3Q9Y5Q9 886 aa14.62□□□□□ -0.07
CDH1-205ENST00000562836 ACIN1Q9UKV3 1341 aaKnown RBP14.59□□□□□ -0.07
CDH1-205ENST00000562836 PKNOX2Q96KN3 472 aa14.57□□□□□ -0.08
CDH1-205ENST00000562836 RTN4Q9NQC3 1192 aaKnown RBP14.56□□□□□ -0.08
CDH1-205ENST00000562836 TIMELESSQ9UNS1 1208 aa14.52□□□□□ -0.09
CDH1-205ENST00000562836 NEUROD1Q13562 356 aa14.51□□□□□ -0.09
CDH1-205ENST00000562836 RANGAP1P46060 587 aaPredicted RBP14.47□□□□□ -0.09
CDH1-205ENST00000562836 ARXQ96QS3 562 aa14.43□□□□□ -0.1
CDH1-205ENST00000562836 CCDC136Q96JN2 1154 aa14.42□□□□□ -0.1
CDH1-205ENST00000562836 SALL2Q9Y467 1007 aaPredicted RBP14.37□□□□□ -0.11
CDH1-205ENST00000562836 PDIA4P13667 645 aaKnown RBP14.34□□□□□ -0.11
CDH1-205ENST00000562836 PDE4CQ08493 712 aa14.29□□□□□ -0.12
CDH1-205ENST00000562836 PCGF6Q9BYE7 350 aa14.28□□□□□ -0.12
CDH1-205ENST00000562836 TULP1O00294 542 aaPredicted RBP14.2□□□□□ -0.14
CDH1-205ENST00000562836 NEFLP07196 543 aa14.19□□□□□ -0.14
CDH1-205ENST00000562836 BCL11BQ9C0K0 894 aaPredicted RBP14.13□□□□□ -0.15
CDH1-205ENST00000562836 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.06□□□□□ -0.16
CDH1-205ENST00000562836 A0A0U1RQG5 324 aaPredicted RBP14.06□□□□□ -0.16
CDH1-205ENST00000562836 FGD1P98174 961 aa14.03□□□□□ -0.16
CDH1-205ENST00000562836 CHIC1Q5VXU3 224 aa13.98□□□□□ -0.17
CDH1-205ENST00000562836 HOMEZQ8IX15 550 aa13.98□□□□□ -0.17
CDH1-205ENST00000562836 ZEB1P37275 1124 aaPredicted RBP13.94□□□□□ -0.18
CDH1-205ENST00000562836 DHX37Q8IY37 1157 aaKnown RBP13.94□□□□□ -0.18
CDH1-205ENST00000562836 ERICH6BQ5W0A0 696 aa13.89□□□□□ -0.19
CDH1-205ENST00000562836 TAF7LQ5H9L4 462 aa13.88□□□□□ -0.19
CDH1-205ENST00000562836 CHMP4AQ9BY43 222 aa13.88□□□□□ -0.19
CDH1-205ENST00000562836 TSHZ2Q9NRE2 1034 aa13.88□□□□□ -0.19
CDH1-205ENST00000562836 HAP1P54257 671 aaPredicted RBP13.85□□□□□ -0.19
CDH1-205ENST00000562836 DEKP35659 375 aaKnown RBP13.85□□□□□ -0.19
CDH1-205ENST00000562836 AMER1Q5JTC6 1135 aaPredicted RBP13.84□□□□□ -0.19
CDH1-205ENST00000562836 AAMPQ13685 434 aa13.83□□□□□ -0.2
CDH1-205ENST00000562836 LOC105371045A0A1W2PR82 267 aa13.81□□□□□ -0.2
CDH1-205ENST00000562836 NPM2Q86SE8 214 aaKnown RBP13.81□□□□□ -0.2
CDH1-205ENST00000562836 ZMYND15Q9H091 742 aa13.79□□□□□ -0.2
CDH1-205ENST00000562836 RBM10P98175 930 aaKnown RBP13.78□□□□□ -0.2
CDH1-205ENST00000562836 PAXIP1Q6ZW49 1069 aaPredicted RBP13.75□□□□□ -0.21
CDH1-205ENST00000562836 C14orf37Q86TY3 774 aa13.74□□□□□ -0.21
CDH1-205ENST00000562836 KCNA4P22459 653 aa13.72□□□□□ -0.21
CDH1-205ENST00000562836 CLSPNQ9HAW4 1339 aa13.7□□□□□ -0.22
CDH1-205ENST00000562836 SAMD1Q6SPF0 538 aaPredicted RBP13.7□□□□□ -0.22
CDH1-205ENST00000562836 TAOK2Q9UL54 1235 aa13.66□□□□□ -0.22
CDH1-205ENST00000562836 VSIG10Q8N0Z9 540 aa13.65□□□□□ -0.22
CDH1-205ENST00000562836 BRD2P25440 801 aaKnown RBP13.64□□□□□ -0.23
CDH1-205ENST00000562836 GLIPR1L2Q4G1C9 344 aa13.61□□□□□ -0.23
CDH1-205ENST00000562836 RSPH6AQ9H0K4 717 aa13.6□□□□□ -0.23
CDH1-205ENST00000562836 MYT1LQ9UL68 1186 aa13.58□□□□□ -0.24
CDH1-205ENST00000562836 IL27Q8NEV9 243 aa13.57□□□□□ -0.24
CDH1-205ENST00000562836 IRX6P78412 446 aaPredicted RBP13.54□□□□□ -0.24
CDH1-205ENST00000562836 TPRNQ4KMQ1 711 aa13.52□□□□□ -0.24
CDH1-205ENST00000562836 YTHDC1Q96MU7 727 aaKnown RBP13.52□□□□□ -0.25
CDH1-205ENST00000562836 NAP1L5Q96NT1 182 aaPredicted RBP13.49□□□□□ -0.25
CDH1-205ENST00000562836 RSPH4AQ5TD94 716 aa13.48□□□□□ -0.25
CDH1-205ENST00000562836 MSH5O43196 834 aa13.47□□□□□ -0.25
CDH1-205ENST00000562836 SUPT16HQ9Y5B9 1047 aaKnown RBP13.45□□□□□ -0.26
CDH1-205ENST00000562836 DIEXFQ68CQ4 756 aaKnown RBP13.43□□□□□ -0.26
CDH1-205ENST00000562836 TRIM26Q12899 539 aaPredicted RBP13.4□□□□□ -0.26
CDH1-205ENST00000562836 MYO15BQ96JP2 1530 aa13.39□□□□□ -0.27
CDH1-205ENST00000562836 NAP1L2Q9ULW6 460 aaPredicted RBP13.39□□□□□ -0.27
CDH1-205ENST00000562836 RBM19Q9Y4C8 960 aaKnown RBP13.38□□□□□ -0.27
CDH1-205ENST00000562836 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.36□□□□□ -0.27
CDH1-205ENST00000562836 CNKSR2Q8WXI2 1034 aa13.36□□□□□ -0.27
CDH1-205ENST00000562836 CHMP4BQ9H444 224 aaKnown RBP13.34□□□□□ -0.27
CDH1-205ENST00000562836 ZNF326Q5BKZ1 582 aaKnown RBP13.33□□□□□ -0.28
CDH1-205ENST00000562836 CDK11BP21127 795 aaKnown RBP13.3□□□□□ -0.28
CDH1-205ENST00000562836 CDK11AQ9UQ88 783 aaPredicted RBP13.3□□□□□ -0.28
CDH1-205ENST00000562836 ZFP91Q96JP5 570 aaPredicted RBP13.24□□□□□ -0.29
CDH1-205ENST00000562836 BBXQ8WY36 941 aaPredicted RBP13.23□□□□□ -0.29
CDH1-205ENST00000562836 FBXO3Q9UK99 471 aa13.23□□□□□ -0.29
CDH1-205ENST00000562836 CFAP44Q96MT7 982 aa13.19□□□□□ -0.3
CDH1-205ENST00000562836 POLR3GLQ9BT43 218 aa13.17□□□□□ -0.3
CDH1-205ENST00000562836 BCCIPQ9P287 314 aaKnown RBP eCLIP13.16□□□□□ -0.3
CDH1-205ENST00000562836 HSP90B1P14625 803 aaKnown RBP13.15□□□□□ -0.3
CDH1-205ENST00000562836 PPP6R1Q9UPN7 881 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms