Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RFX3P48380 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
RFX3P48380 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
RFX3P48380 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.03■□□□□ -0
RFX3P48380 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RFX3P48380 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.03■□□□□ -0
RFX3P48380 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
RFX3P48380 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
RFX3P48380 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RFX3P48380 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
RFX3P48380 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RFX3P48380 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.03■□□□□ -0
RFX3P48380 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.03■□□□□ -0
RFX3P48380 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 AC004461.1-201ENST00000412461 403 ntBASIC15.03■□□□□ -0
RFX3P48380 AC098859.1-201ENST00000502915 1238 ntBASIC15.03■□□□□ -0
RFX3P48380 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
RFX3P48380 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.03■□□□□ -0
RFX3P48380 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.03■□□□□ -0
RFX3P48380 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 AL603832.2-201ENST00000566195 2125 ntBASIC15.03■□□□□ -0
RFX3P48380 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.03■□□□□ -0
RFX3P48380 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.03■□□□□ -0
RFX3P48380 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.03■□□□□ -0
RFX3P48380 AL365330.1-201ENST00000607459 531 ntBASIC15.03■□□□□ -0
RFX3P48380 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
RFX3P48380 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
RFX3P48380 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.03■□□□□ -0
RFX3P48380 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RFX3P48380 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
RFX3P48380 LINC02447-202ENST00000501888 2146 ntBASIC15.02■□□□□ -0
RFX3P48380 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
RFX3P48380 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.02■□□□□ -0
RFX3P48380 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.02■□□□□ -0
RFX3P48380 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
RFX3P48380 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 AC142381.1-201ENST00000426099 345 ntBASIC15.02■□□□□ -0
RFX3P48380 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.02■□□□□ -0
RFX3P48380 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.02■□□□□ -0
RFX3P48380 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.02■□□□□ -0
RFX3P48380 YBX1P5-201ENST00000509441 847 ntBASIC15.02■□□□□ -0
RFX3P48380 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RFX3P48380 SNHG9-202ENST00000564014 471 ntBASIC15.02■□□□□ -0
RFX3P48380 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.02■□□□□ -0
RFX3P48380 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.02■□□□□ -0
RFX3P48380 AC073389.1-201ENST00000595595 795 ntBASIC15.02■□□□□ -0
RFX3P48380 AC134684.3-201ENST00000641758 218 ntBASIC15.02■□□□□ -0
RFX3P48380 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.02□□□□□ -0.01
RFX3P48380 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.02□□□□□ -0.01
RFX3P48380 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.02□□□□□ -0.01
RFX3P48380 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
RFX3P48380 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.02□□□□□ -0.01
RFX3P48380 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.02□□□□□ -0.01
RFX3P48380 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.02□□□□□ -0.01
RFX3P48380 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.02□□□□□ -0.01
RFX3P48380 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.02□□□□□ -0.01
RFX3P48380 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
RFX3P48380 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.02□□□□□ -0.01
RFX3P48380 FOXO1B-201ENST00000504678 1527 ntBASIC15.02□□□□□ -0.01
RFX3P48380 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
RFX3P48380 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RFX3P48380 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
RFX3P48380 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
RFX3P48380 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
RFX3P48380 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.01□□□□□ -0.01
RFX3P48380 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.01□□□□□ -0.01
RFX3P48380 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms