Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
MSX2P35548 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.25■□□□□ 0.03
MSX2P35548 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.25■□□□□ 0.03
MSX2P35548 FOSL1P1-201ENST00000511041 816 ntBASIC15.25■□□□□ 0.03
MSX2P35548 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.25■□□□□ 0.03
MSX2P35548 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
MSX2P35548 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 AJ011931.1-201ENST00000618749 2492 ntBASIC15.25■□□□□ 0.03
MSX2P35548 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSX2P35548 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.25■□□□□ 0.03
MSX2P35548 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
MSX2P35548 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.24■□□□□ 0.03
MSX2P35548 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.24■□□□□ 0.03
MSX2P35548 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 AC093724.1-201ENST00000448659 1027 ntBASIC15.24■□□□□ 0.03
MSX2P35548 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.24■□□□□ 0.03
MSX2P35548 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.24■□□□□ 0.03
MSX2P35548 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSX2P35548 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.24■□□□□ 0.03
MSX2P35548 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
MSX2P35548 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.24■□□□□ 0.03
MSX2P35548 KRT8P44-201ENST00000441609 1350 ntBASIC15.24■□□□□ 0.03
MSX2P35548 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.23■□□□□ 0.03
MSX2P35548 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
MSX2P35548 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms