Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.81■□□□□ 0.44
CIITAP33076 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.81■□□□□ 0.44
CIITAP33076 COX20P2-201ENST00000452636 358 ntBASIC17.81■□□□□ 0.44
CIITAP33076 RN7SL399P-201ENST00000471648 279 ntBASIC17.81■□□□□ 0.44
CIITAP33076 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.81■□□□□ 0.44
CIITAP33076 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.81■□□□□ 0.44
CIITAP33076 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.81■□□□□ 0.44
CIITAP33076 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CIITAP33076 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CIITAP33076 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.81■□□□□ 0.44
CIITAP33076 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 AL133267.1-201ENST00000398220 340 ntBASIC17.8■□□□□ 0.44
CIITAP33076 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.8■□□□□ 0.44
CIITAP33076 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 AC140912.1-201ENST00000577171 1054 ntBASIC17.8■□□□□ 0.44
CIITAP33076 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.8■□□□□ 0.44
CIITAP33076 AL121723.1-201ENST00000445194 1519 ntBASIC17.8■□□□□ 0.44
CIITAP33076 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.8■□□□□ 0.44
CIITAP33076 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CIITAP33076 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CIITAP33076 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CIITAP33076 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CIITAP33076 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
CIITAP33076 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
CIITAP33076 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.79■□□□□ 0.44
CIITAP33076 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.79■□□□□ 0.44
CIITAP33076 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CIITAP33076 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.79■□□□□ 0.44
CIITAP33076 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 KRT18P43-201ENST00000469825 1281 ntBASIC17.79■□□□□ 0.44
CIITAP33076 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.79■□□□□ 0.44
CIITAP33076 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CIITAP33076 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.79■□□□□ 0.44
CIITAP33076 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.79■□□□□ 0.44
CIITAP33076 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 AC015910.1-201ENST00000579400 975 ntBASIC17.79■□□□□ 0.44
CIITAP33076 AC093726.1-201ENST00000608064 963 ntBASIC17.79■□□□□ 0.44
CIITAP33076 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CIITAP33076 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CIITAP33076 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
CIITAP33076 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CIITAP33076 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.78■□□□□ 0.44
CIITAP33076 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms