Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 AC124283.3-201ENST00000570869 594 ntBASIC18.64■□□□□ 0.57
HLA-DOAP06340 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 AC000095.1-201ENST00000603208 874 ntBASIC18.64■□□□□ 0.57
HLA-DOAP06340 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 RPSAP52-203ENST00000622976 1023 ntBASIC18.64■□□□□ 0.57
HLA-DOAP06340 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 BOLA2P3-201ENST00000404566 256 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 AC022210.1-201ENST00000449856 793 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 USP32P1-208ENST00000506594 1164 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 TDH-203ENST00000531764 1110 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 AC120045.2-201ENST00000567334 178 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 MIR5189-201ENST00000577370 114 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 AC233724.13-201ENST00000598383 410 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 AL662844.4-201ENST00000606367 2838 ntBASIC18.63■□□□□ 0.57
HLA-DOAP06340 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DOAP06340 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HLA-DOAP06340 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 PRORSD1P-202ENST00000563365 2154 ntBASIC18.62■□□□□ 0.57
HLA-DOAP06340 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.62■□□□□ 0.57
HLA-DOAP06340 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DOAP06340 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms