Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.63■□□□□ 0.89
COL3A1P02461 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC20.63■□□□□ 0.89
COL3A1P02461 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.63■□□□□ 0.89
COL3A1P02461 AL512343.1-201ENST00000605837 169 ntBASIC20.63■□□□□ 0.89
COL3A1P02461 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC20.63■□□□□ 0.89
COL3A1P02461 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL3A1P02461 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC20.63■□□□□ 0.89
COL3A1P02461 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL3A1P02461 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC20.63■□□□□ 0.89
COL3A1P02461 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
COL3A1P02461 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 ACTBP8-201ENST00000403258 1108 ntBASIC20.62■□□□□ 0.89
COL3A1P02461 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
COL3A1P02461 KRT90P-201ENST00000549264 1064 ntBASIC20.62■□□□□ 0.89
COL3A1P02461 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL3A1P02461 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC20.62■□□□□ 0.89
COL3A1P02461 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL3A1P02461 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 RPL5P21-201ENST00000404620 815 ntBASIC20.62■□□□□ 0.89
COL3A1P02461 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.62■□□□□ 0.89
COL3A1P02461 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
COL3A1P02461 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.62■□□□□ 0.89
COL3A1P02461 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.62■□□□□ 0.89
COL3A1P02461 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC20.62■□□□□ 0.89
COL3A1P02461 PRSS30P-206ENST00000641773 873 ntBASIC20.62■□□□□ 0.89
COL3A1P02461 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.62■□□□□ 0.89
COL3A1P02461 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL3A1P02461 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.61■□□□□ 0.89
COL3A1P02461 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
COL3A1P02461 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.61■□□□□ 0.89
COL3A1P02461 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 AC092933.1-201ENST00000393644 945 ntBASIC20.61■□□□□ 0.89
COL3A1P02461 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.61■□□□□ 0.89
COL3A1P02461 HLA-K-203ENST00000430151 1046 ntBASIC20.61■□□□□ 0.89
COL3A1P02461 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC20.61■□□□□ 0.89
COL3A1P02461 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.61■□□□□ 0.89
COL3A1P02461 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
COL3A1P02461 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
COL3A1P02461 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.61■□□□□ 0.89
COL3A1P02461 AC244669.2-201ENST00000612320 853 ntBASIC20.61■□□□□ 0.89
COL3A1P02461 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC20.61■□□□□ 0.89
COL3A1P02461 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.61■□□□□ 0.89
COL3A1P02461 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC20.61■□□□□ 0.89
COL3A1P02461 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL3A1P02461 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC20.61■□□□□ 0.89
COL3A1P02461 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC20.61■□□□□ 0.89
COL3A1P02461 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL3A1P02461 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
COL3A1P02461 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL3A1P02461 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC20.6■□□□□ 0.89
COL3A1P02461 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 AC148477.4-201ENST00000613430 1793 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC20.6■□□□□ 0.89
COL3A1P02461 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL3A1P02461 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms