Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
TNFP01375 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.47■□□□□ 0.07
TNFP01375 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.47■□□□□ 0.07
TNFP01375 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 KRT8P22-201ENST00000562317 1415 ntBASIC15.47■□□□□ 0.07
TNFP01375 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.47■□□□□ 0.07
TNFP01375 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
TNFP01375 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.47■□□□□ 0.07
TNFP01375 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.47■□□□□ 0.07
TNFP01375 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TNFP01375 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.47■□□□□ 0.07
TNFP01375 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.46■□□□□ 0.07
TNFP01375 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
TNFP01375 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 AL662844.4-201ENST00000606367 2838 ntBASIC15.46■□□□□ 0.07
TNFP01375 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
TNFP01375 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
TNFP01375 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 AC134915.1-201ENST00000426461 574 ntBASIC15.46■□□□□ 0.07
TNFP01375 AL162726.2-201ENST00000438986 1017 ntBASIC15.46■□□□□ 0.07
TNFP01375 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.46■□□□□ 0.07
TNFP01375 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.46■□□□□ 0.07
TNFP01375 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.46■□□□□ 0.07
TNFP01375 AC106886.1-201ENST00000568660 600 ntBASIC15.46■□□□□ 0.07
TNFP01375 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
TNFP01375 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 AC018892.3-201ENST00000623986 2499 ntBASIC15.46■□□□□ 0.07
TNFP01375 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TNFP01375 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TNFP01375 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.46■□□□□ 0.06
TNFP01375 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.46■□□□□ 0.06
TNFP01375 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.46■□□□□ 0.06
TNFP01375 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TNFP01375 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TNFP01375 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.45■□□□□ 0.06
TNFP01375 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.45■□□□□ 0.06
TNFP01375 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.45■□□□□ 0.06
TNFP01375 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TNFP01375 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 ARSEP1-201ENST00000420443 635 ntBASIC15.45■□□□□ 0.06
TNFP01375 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.45■□□□□ 0.06
TNFP01375 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TNFP01375 IGHV3-71-201ENST00000523324 359 ntBASIC15.45■□□□□ 0.06
TNFP01375 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 KRT17P8-201ENST00000540749 863 ntBASIC15.45■□□□□ 0.06
TNFP01375 HILS1-202ENST00000545329 423 ntBASIC15.45■□□□□ 0.06
TNFP01375 RAB43P1-201ENST00000561790 589 ntBASIC15.45■□□□□ 0.06
TNFP01375 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.45■□□□□ 0.06
TNFP01375 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TNFP01375 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.45■□□□□ 0.06
TNFP01375 AC015936.2-201ENST00000593177 259 ntBASIC15.45■□□□□ 0.06
TNFP01375 BRI3BPP1-201ENST00000594224 787 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms