Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
NKX2-2O95096 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX2-2O95096 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
NKX2-2O95096 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.65□□□□□ -0.06
NKX2-2O95096 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 Z97205.2-201ENST00000564697 1639 ntBASIC14.64□□□□□ -0.07
NKX2-2O95096 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
NKX2-2O95096 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.64□□□□□ -0.07
NKX2-2O95096 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.64□□□□□ -0.07
NKX2-2O95096 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.64□□□□□ -0.07
NKX2-2O95096 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 AL512361.1-201ENST00000554200 418 ntBASIC14.64□□□□□ -0.07
NKX2-2O95096 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-2O95096 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-2O95096 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX2-2O95096 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 AL139384.1-201ENST00000612143 3047 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC009090.5-201ENST00000624886 2285 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX2-2O95096 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC074338.1-201ENST00000416825 156 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 AL645939.2-201ENST00000427340 991 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC092580.3-201ENST00000430932 139 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC097493.3-201ENST00000509725 367 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC027369.6-201ENST00000525520 931 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.63□□□□□ -0.07
NKX2-2O95096 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC010336.2-201ENST00000564226 506 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX2-2O95096 GPALPP1-207ENST00000611650 899 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX2-2O95096 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 AC126177.1-201ENST00000547829 2218 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-2O95096 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 PPT1-215ENST00000641471 2368 ntBASIC14.63□□□□□ -0.07
NKX2-2O95096 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-2O95096 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-2O95096 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms