Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC005632.3-201ENST00000605544 308 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 PCBP2-OT1-201ENST00000634357 590 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AL627231.1-201ENST00000394467 1125 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AC244197.1-201ENST00000456494 951 ntBASIC12.07□□□□□ -0.48
COL6A5A8TX70 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
COL6A5A8TX70 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC12.07□□□□□ -0.48
COL6A5A8TX70 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AC004522.1-201ENST00000419978 654 ntBASIC12.06□□□□□ -0.48
COL6A5A8TX70 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 MEG3_2.1-201ENST00000611456 105 ntBASIC12.06□□□□□ -0.48
COL6A5A8TX70 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AL357563.1-201ENST00000404728 395 ntBASIC12.06□□□□□ -0.48
COL6A5A8TX70 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 GHSR-202ENST00000427970 912 ntBASIC12.06□□□□□ -0.48
COL6A5A8TX70 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 MIR4683-201ENST00000579659 81 ntBASIC12.06□□□□□ -0.48
COL6A5A8TX70 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.06□□□□□ -0.48
COL6A5A8TX70 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
COL6A5A8TX70 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AC020916.1-201ENST00000587762 1774 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 RNU1-114P-201ENST00000365297 166 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AP003398.1-201ENST00000531124 318 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 RBM8B-201ENST00000555532 525 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 AL353622.2-201ENST00000605846 425 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms