Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
MMP28Q9H239 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
MMP28Q9H239 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
MMP28Q9H239 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
MMP28Q9H239 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.16□□□□□ -0.14
MMP28Q9H239 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.16□□□□□ -0.14
MMP28Q9H239 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.16□□□□□ -0.14
MMP28Q9H239 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.16□□□□□ -0.14
MMP28Q9H239 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 REXO1L6P-202ENST00000619970 1078 ntBASIC14.16□□□□□ -0.14
MMP28Q9H239 AC073592.4-201ENST00000623827 446 ntBASIC14.16□□□□□ -0.14
MMP28Q9H239 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
MMP28Q9H239 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
MMP28Q9H239 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 LINC01230-201ENST00000625222 3017 ntBASIC14.16□□□□□ -0.14
MMP28Q9H239 AL031731.1-201ENST00000642131 2094 ntBASIC14.16□□□□□ -0.14
MMP28Q9H239 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.16□□□□□ -0.14
MMP28Q9H239 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
MMP28Q9H239 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MMP28Q9H239 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
MMP28Q9H239 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
MMP28Q9H239 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.15□□□□□ -0.14
MMP28Q9H239 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 AL022342.1-201ENST00000400363 863 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 SAPCD2P3-201ENST00000455031 850 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
MMP28Q9H239 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 AP002469.2-201ENST00000531724 424 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.15□□□□□ -0.14
MMP28Q9H239 AC013467.2-201ENST00000605472 835 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 AL139288.1-201ENST00000623748 933 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
MMP28Q9H239 AC004817.3-201ENST00000602957 2129 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 AC148477.5-201ENST00000625164 1645 ntBASIC14.15□□□□□ -0.14
MMP28Q9H239 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms