Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 MTHFR-217ENST00000641820 1569 ntBASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AP006294.1-201ENST00000415407 339 ntBASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 MEIS3P1-201ENST00000495167 958 ntBASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AC008494.3-201ENST00000606615 944 ntBASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAIPQ9BWF2 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 KRT8P37-201ENST00000451609 1420 ntBASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms