Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 AL138688.1-201ENST00000624851 1594 ntBASIC4.96□□□□□ -1.61
SYNE1Q8NF91 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 AC007541.1-201ENST00000570282 1469 ntBASIC4.96□□□□□ -1.61
SYNE1Q8NF91 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 PGF-202ENST00000405431 666 ntTSL 5 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 PC-204ENST00000524491 1714 ntTSL 2 BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SYNE1Q8NF91 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AL080243.2-201ENST00000418783 582 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 STOM-203ENST00000538954 1257 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 RAB43P1-201ENST00000561790 589 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 LITAF-210ENST00000571976 548 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 LITAF-214ENST00000574703 486 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 GOLGA2P9-201ENST00000596977 1937 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC4.96□□□□□ -1.62
SYNE1Q8NF91 AL033527.4-201ENST00000641026 673 ntBASIC4.96□□□□□ -1.62
SYNE1Q8NF91 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms