Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 MRPL20P1-201ENST00000400819 433 ntBASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 MTATP6P19-201ENST00000413797 659 ntBASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 AC007967.2-201ENST00000432613 625 ntBASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 DNAJB3-201ENST00000446806 729 ntBASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 AL805961.1-202ENST00000641562 540 ntBASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 AL353732.1-201ENST00000569618 1459 ntBASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 PRSS29P-201ENST00000440800 595 ntBASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 IGHV3-65-201ENST00000523210 341 ntBASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 AC087641.1-201ENST00000557561 1021 ntBASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 AC087481.3-201ENST00000602886 1894 ntBASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
DEPDC4Q8N2C3 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PI4KAP1-204ENST00000612579 1703 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC005622.1-201ENST00000636801 1703 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC087163.2-201ENST00000457299 853 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC002347.1-201ENST00000569543 541 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms