Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 DBET-201ENST00000630918 3363 ntBASIC14.15□□□□□ -0.14
SKA3Q8IX90 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SKA3Q8IX90 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AC112504.1-201ENST00000623415 1841 ntBASIC14.14□□□□□ -0.15
SKA3Q8IX90 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.14□□□□□ -0.15
SKA3Q8IX90 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AL353705.2-201ENST00000428243 662 ntBASIC14.14□□□□□ -0.15
SKA3Q8IX90 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AL512356.2-201ENST00000546955 174 ntBASIC14.14□□□□□ -0.15
SKA3Q8IX90 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 MIR6080-201ENST00000617359 66 ntBASIC14.14□□□□□ -0.15
SKA3Q8IX90 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.14□□□□□ -0.15
SKA3Q8IX90 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 AL691432.1-201ENST00000596308 1422 ntBASIC14.14□□□□□ -0.15
SKA3Q8IX90 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SKA3Q8IX90 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms