Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 AC011270.2-201ENST00000624293 2550 ntBASIC19.22■□□□□ 0.67
VPS53Q5VIR6 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 AC067863.1-201ENST00000494933 530 ntBASIC19.22■□□□□ 0.67
VPS53Q5VIR6 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 AL589739.1-201ENST00000607720 493 ntBASIC19.22■□□□□ 0.67
VPS53Q5VIR6 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.21■□□□□ 0.67
VPS53Q5VIR6 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.21■□□□□ 0.67
VPS53Q5VIR6 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 SPDYE17-201ENST00000412399 783 ntBASIC19.21■□□□□ 0.67
VPS53Q5VIR6 HIST3H2BA-201ENST00000436555 524 ntBASIC19.21■□□□□ 0.67
VPS53Q5VIR6 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 AC069120.2-201ENST00000524091 540 ntBASIC19.21■□□□□ 0.67
VPS53Q5VIR6 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 AP001282.1-201ENST00000531301 1499 ntBASIC19.21■□□□□ 0.67
VPS53Q5VIR6 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS53Q5VIR6 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 AC004987.2-201ENST00000395959 1148 ntBASIC19.2■□□□□ 0.66
VPS53Q5VIR6 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 AC243562.2-201ENST00000561247 970 ntBASIC19.2■□□□□ 0.66
VPS53Q5VIR6 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 AC026979.3-201ENST00000607315 403 ntBASIC19.2■□□□□ 0.66
VPS53Q5VIR6 TEX28P1-201ENST00000613479 1221 ntBASIC19.2■□□□□ 0.66
VPS53Q5VIR6 TEX28P2-201ENST00000617764 1221 ntBASIC19.2■□□□□ 0.66
VPS53Q5VIR6 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VPS53Q5VIR6 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC011477.6-201ENST00000604980 1927 ntBASIC19.19■□□□□ 0.66
VPS53Q5VIR6 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms