Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
TFF3Q07654 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
TFF3Q07654 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 AC004987.2-201ENST00000395959 1148 ntBASIC13.97□□□□□ -0.17
TFF3Q07654 MIR1908-201ENST00000410394 80 ntBASIC13.97□□□□□ -0.17
TFF3Q07654 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 CTBP2P5-201ENST00000454986 1264 ntBASIC13.97□□□□□ -0.17
TFF3Q07654 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.97□□□□□ -0.17
TFF3Q07654 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 AC133539.2-201ENST00000604757 467 ntBASIC13.97□□□□□ -0.17
TFF3Q07654 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
TFF3Q07654 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
TFF3Q07654 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
TFF3Q07654 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TFF3Q07654 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
TFF3Q07654 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
TFF3Q07654 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.96□□□□□ -0.17
TFF3Q07654 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.96□□□□□ -0.17
TFF3Q07654 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
TFF3Q07654 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.96□□□□□ -0.17
TFF3Q07654 KLF2P4-201ENST00000451959 1225 ntBASIC13.96□□□□□ -0.17
TFF3Q07654 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
TFF3Q07654 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.96□□□□□ -0.17
TFF3Q07654 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.96□□□□□ -0.17
TFF3Q07654 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.96□□□□□ -0.17
TFF3Q07654 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 BRI3BPP1-201ENST00000594224 787 ntBASIC13.96□□□□□ -0.17
TFF3Q07654 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 CU634019.7-201ENST00000624153 1185 ntBASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms