Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.41■□□□□ 0.38
CLCN3P51790 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCN3P51790 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CLCN3P51790 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 AC079776.1-201ENST00000401540 1152 ntBASIC17.4■□□□□ 0.38
CLCN3P51790 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.4■□□□□ 0.38
CLCN3P51790 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.4■□□□□ 0.38
CLCN3P51790 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.4■□□□□ 0.38
CLCN3P51790 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.4■□□□□ 0.38
CLCN3P51790 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.4■□□□□ 0.38
CLCN3P51790 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCN3P51790 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCN3P51790 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CLCN3P51790 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
CLCN3P51790 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.39■□□□□ 0.38
CLCN3P51790 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CLCN3P51790 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLCN3P51790 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
CLCN3P51790 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CLCN3P51790 AL442647.2-201ENST00000429864 857 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.39■□□□□ 0.37
CLCN3P51790 ATP5G2P4-201ENST00000442175 420 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.39■□□□□ 0.37
CLCN3P51790 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.39■□□□□ 0.37
CLCN3P51790 IGHV3-71-201ENST00000523324 359 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.39■□□□□ 0.37
CLCN3P51790 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.39■□□□□ 0.37
CLCN3P51790 AL359711.2-201ENST00000563105 872 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 MIR4313-201ENST00000580760 101 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 BRI3BPP1-201ENST00000594224 787 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 PCDHB19P-201ENST00000570871 2371 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.39■□□□□ 0.37
CLCN3P51790 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.39■□□□□ 0.37
CLCN3P51790 LINC02447-202ENST00000501888 2146 ntBASIC17.39■□□□□ 0.37
CLCN3P51790 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCN3P51790 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms