Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.06■□□□□ 0
RFX3P48380 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
RFX3P48380 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.06■□□□□ 0
RFX3P48380 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.06■□□□□ 0
RFX3P48380 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFX3P48380 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RFX3P48380 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
RFX3P48380 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RFX3P48380 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
RFX3P48380 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RFX3P48380 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.05■□□□□ 0
RFX3P48380 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
RFX3P48380 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
RFX3P48380 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
RFX3P48380 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
RFX3P48380 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.05■□□□□ -0
RFX3P48380 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.05■□□□□ -0
RFX3P48380 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
RFX3P48380 AC069335.1-201ENST00000489972 472 ntBASIC15.05■□□□□ -0
RFX3P48380 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 AC022145.2-201ENST00000598203 171 ntBASIC15.05■□□□□ -0
RFX3P48380 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 AL596442.2-201ENST00000610240 980 ntBASIC15.05■□□□□ -0
RFX3P48380 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.05■□□□□ -0
RFX3P48380 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ -0
RFX3P48380 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.05■□□□□ -0
RFX3P48380 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
RFX3P48380 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
RFX3P48380 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
RFX3P48380 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 AC092850.2-201ENST00000623821 2697 ntBASIC15.05■□□□□ -0
RFX3P48380 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
RFX3P48380 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.05■□□□□ -0
RFX3P48380 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFX3P48380 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RFX3P48380 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.04■□□□□ -0
RFX3P48380 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 AC104640.1-201ENST00000562617 2109 ntBASIC15.04■□□□□ -0
RFX3P48380 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RFX3P48380 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.04■□□□□ -0
RFX3P48380 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
RFX3P48380 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.04■□□□□ -0
RFX3P48380 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RFX3P48380 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 MIR1233-2-201ENST00000408138 82 ntBASIC15.04■□□□□ -0
RFX3P48380 MIR1233-1-201ENST00000408722 82 ntBASIC15.04■□□□□ -0
RFX3P48380 KRT18P32-201ENST00000424695 1287 ntBASIC15.04■□□□□ -0
RFX3P48380 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.04■□□□□ -0
RFX3P48380 SLC25A39P2-201ENST00000537614 270 ntBASIC15.04■□□□□ -0
RFX3P48380 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.04■□□□□ -0
RFX3P48380 AP000842.3-202ENST00000569238 1080 ntBASIC15.04■□□□□ -0
RFX3P48380 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.04■□□□□ -0
RFX3P48380 AC105339.1-204ENST00000636249 355 ntBASIC15.04■□□□□ -0
RFX3P48380 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RFX3P48380 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.04■□□□□ -0
RFX3P48380 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFX3P48380 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms