Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.84■□□□□ 0.61
BRCA1P38398 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.84■□□□□ 0.61
BRCA1P38398 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.84■□□□□ 0.61
BRCA1P38398 AC139713.2-201ENST00000641328 2723 ntBASIC18.84■□□□□ 0.61
BRCA1P38398 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.84■□□□□ 0.61
BRCA1P38398 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.84■□□□□ 0.61
BRCA1P38398 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.84■□□□□ 0.61
BRCA1P38398 RN7SL67P-201ENST00000492147 296 ntBASIC18.84■□□□□ 0.61
BRCA1P38398 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.84■□□□□ 0.61
BRCA1P38398 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
BRCA1P38398 AC004466.1-201ENST00000599515 1080 ntBASIC18.84■□□□□ 0.61
BRCA1P38398 AC092171.5-201ENST00000608012 942 ntBASIC18.84■□□□□ 0.61
BRCA1P38398 AC007881.3-201ENST00000608897 607 ntBASIC18.84■□□□□ 0.61
BRCA1P38398 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
BRCA1P38398 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
BRCA1P38398 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
BRCA1P38398 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BRCA1P38398 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BRCA1P38398 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.83■□□□□ 0.61
BRCA1P38398 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRCA1P38398 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.83■□□□□ 0.6
BRCA1P38398 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRCA1P38398 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRCA1P38398 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.83■□□□□ 0.6
BRCA1P38398 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.83■□□□□ 0.6
BRCA1P38398 NDUFS6P1-201ENST00000485187 316 ntBASIC18.83■□□□□ 0.6
BRCA1P38398 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BRCA1P38398 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.83■□□□□ 0.6
BRCA1P38398 AL136295.7-201ENST00000619226 1200 ntBASIC18.83■□□□□ 0.6
BRCA1P38398 AC242376.2-201ENST00000619355 883 ntBASIC18.83■□□□□ 0.6
BRCA1P38398 AC138466.3-201ENST00000619983 221 ntBASIC18.83■□□□□ 0.6
BRCA1P38398 AL603764.1-201ENST00000636452 321 ntBASIC18.83■□□□□ 0.6
BRCA1P38398 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
BRCA1P38398 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.83■□□□□ 0.6
BRCA1P38398 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BRCA1P38398 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.83■□□□□ 0.6
BRCA1P38398 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.83■□□□□ 0.6
BRCA1P38398 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.83■□□□□ 0.6
BRCA1P38398 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
BRCA1P38398 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
BRCA1P38398 MIR1227-201ENST00000408484 88 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 AC004066.1-201ENST00000502488 802 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 MIR4683-201ENST00000579659 81 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 MEG3_2.1-201ENST00000611456 105 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 AC103691.2-201ENST00000618824 433 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 TBC1D3J-201ENST00000620719 1426 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
BRCA1P38398 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
BRCA1P38398 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.82■□□□□ 0.6
BRCA1P38398 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.82■□□□□ 0.6
BRCA1P38398 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 TMCO5B-205ENST00000530020 894 ntBASIC18.82■□□□□ 0.6
BRCA1P38398 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.82■□□□□ 0.6
BRCA1P38398 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.82■□□□□ 0.6
BRCA1P38398 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BRCA1P38398 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.81■□□□□ 0.6
BRCA1P38398 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms