Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
SCN4AP35499 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.35■□□□□ 0.53
SCN4AP35499 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SCN4AP35499 MIR4754-201ENST00000582477 89 ntBASIC18.35■□□□□ 0.53
SCN4AP35499 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SCN4AP35499 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.35■□□□□ 0.53
SCN4AP35499 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SCN4AP35499 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN4AP35499 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN4AP35499 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.34■□□□□ 0.53
SCN4AP35499 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.34■□□□□ 0.53
SCN4AP35499 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.34■□□□□ 0.53
SCN4AP35499 ISCA2P1-201ENST00000425548 448 ntBASIC18.34■□□□□ 0.53
SCN4AP35499 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN4AP35499 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.34■□□□□ 0.53
SCN4AP35499 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.34■□□□□ 0.53
SCN4AP35499 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 AC138894.2-201ENST00000602838 371 ntBASIC18.34■□□□□ 0.53
SCN4AP35499 AC092171.5-201ENST00000608012 942 ntBASIC18.34■□□□□ 0.53
SCN4AP35499 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 AC004923.1-202ENST00000642106 209 ntBASIC18.34■□□□□ 0.53
SCN4AP35499 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN4AP35499 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN4AP35499 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN4AP35499 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN4AP35499 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN4AP35499 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
SCN4AP35499 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN4AP35499 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN4AP35499 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN4AP35499 AC073150.1-201ENST00000450406 1084 ntBASIC18.33■□□□□ 0.53
SCN4AP35499 AC004066.1-201ENST00000502488 802 ntBASIC18.33■□□□□ 0.53
SCN4AP35499 AC009779.1-201ENST00000551138 283 ntBASIC18.33■□□□□ 0.53
SCN4AP35499 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN4AP35499 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.33■□□□□ 0.53
SCN4AP35499 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN4AP35499 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SCN4AP35499 AC022188.1-201ENST00000620960 1664 ntBASIC18.33■□□□□ 0.53
SCN4AP35499 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 AL158070.2-201ENST00000623713 1621 ntBASIC18.33■□□□□ 0.52
SCN4AP35499 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN4AP35499 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN4AP35499 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.33■□□□□ 0.52
SCN4AP35499 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.33■□□□□ 0.52
SCN4AP35499 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN4AP35499 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.33■□□□□ 0.52
SCN4AP35499 AL139008.1-201ENST00000437894 228 ntBASIC18.33■□□□□ 0.52
SCN4AP35499 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SCN4AP35499 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN4AP35499 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN4AP35499 AC141586.1-203ENST00000567242 366 ntBASIC18.33■□□□□ 0.52
SCN4AP35499 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.33■□□□□ 0.52
SCN4AP35499 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.33■□□□□ 0.52
SCN4AP35499 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SCN4AP35499 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.33■□□□□ 0.52
SCN4AP35499 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms