Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 KRT8P44-201ENST00000441609 1350 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.28■□□□□ 0.52
COL2A1P02458 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.28■□□□□ 0.52
COL2A1P02458 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC18.27■□□□□ 0.52
COL2A1P02458 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.27■□□□□ 0.52
COL2A1P02458 AC114812.1-204ENST00000449669 728 ntBASIC18.27■□□□□ 0.52
COL2A1P02458 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.27■□□□□ 0.52
COL2A1P02458 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.27■□□□□ 0.52
COL2A1P02458 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.27■□□□□ 0.52
COL2A1P02458 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 PCDHA14-201ENST00000506751 2298 ntBASIC18.27■□□□□ 0.52
COL2A1P02458 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
COL2A1P02458 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 AL603832.2-201ENST00000566195 2125 ntBASIC18.27■□□□□ 0.52
COL2A1P02458 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.27■□□□□ 0.52
COL2A1P02458 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL2A1P02458 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
COL2A1P02458 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC18.27■□□□□ 0.52
COL2A1P02458 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL2A1P02458 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL2A1P02458 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.27■□□□□ 0.51
COL2A1P02458 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
COL2A1P02458 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
COL2A1P02458 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
COL2A1P02458 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 AL139094.1-201ENST00000405549 1188 ntBASIC18.26■□□□□ 0.51
COL2A1P02458 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 RNA5SP486-201ENST00000515961 83 ntBASIC18.26■□□□□ 0.51
COL2A1P02458 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.26■□□□□ 0.51
COL2A1P02458 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.26■□□□□ 0.51
COL2A1P02458 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.26■□□□□ 0.51
COL2A1P02458 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 PRORSD1P-202ENST00000563365 2154 ntBASIC18.26■□□□□ 0.51
COL2A1P02458 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
COL2A1P02458 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 BCYRN1-201ENST00000418539 200 ntBASIC18.26■□□□□ 0.51
COL2A1P02458 PFN1P12-201ENST00000455938 534 ntBASIC18.26■□□□□ 0.51
COL2A1P02458 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC18.26■□□□□ 0.51
COL2A1P02458 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.26■□□□□ 0.51
COL2A1P02458 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
COL2A1P02458 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL2A1P02458 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.26■□□□□ 0.51
COL2A1P02458 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.25■□□□□ 0.51
COL2A1P02458 AC148477.4-201ENST00000613430 1793 ntBASIC18.25■□□□□ 0.51
COL2A1P02458 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.25■□□□□ 0.51
COL2A1P02458 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.25■□□□□ 0.51
COL2A1P02458 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
COL2A1P02458 AC006449.5-201ENST00000610658 2098 ntBASIC18.25■□□□□ 0.51
COL2A1P02458 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
COL2A1P02458 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.25■□□□□ 0.51
COL2A1P02458 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC18.25■□□□□ 0.51
COL2A1P02458 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC18.25■□□□□ 0.51
COL2A1P02458 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.25■□□□□ 0.51
COL2A1P02458 AC099548.2-209ENST00000480264 625 ntBASIC18.25■□□□□ 0.51
COL2A1P02458 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.25■□□□□ 0.51
COL2A1P02458 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC18.25■□□□□ 0.51
COL2A1P02458 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.25■□□□□ 0.51
COL2A1P02458 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18.25■□□□□ 0.51
COL2A1P02458 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18.25■□□□□ 0.51
COL2A1P02458 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.25■□□□□ 0.51
COL2A1P02458 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.25■□□□□ 0.51
COL2A1P02458 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.25■□□□□ 0.51
COL2A1P02458 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.25■□□□□ 0.51
COL2A1P02458 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms