Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.68■□□□□ 0.1
VPS4BO75351 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS4BO75351 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS4BO75351 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.67■□□□□ 0.1
VPS4BO75351 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 AP001282.1-201ENST00000531301 1499 ntBASIC15.67■□□□□ 0.1
VPS4BO75351 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4BO75351 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.67■□□□□ 0.1
VPS4BO75351 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4BO75351 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS4BO75351 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4BO75351 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS4BO75351 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 AC112191.1-201ENST00000523689 701 ntBASIC15.67■□□□□ 0.1
VPS4BO75351 AC109635.5-201ENST00000533593 962 ntBASIC15.67■□□□□ 0.1
VPS4BO75351 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS4BO75351 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS4BO75351 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 AC012645.4-201ENST00000610691 1061 ntBASIC15.67■□□□□ 0.1
VPS4BO75351 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS4BO75351 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS4BO75351 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VPS4BO75351 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS4BO75351 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.66■□□□□ 0.1
VPS4BO75351 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS4BO75351 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS4BO75351 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
VPS4BO75351 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms