Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC3O15379 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC3O15379 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC3O15379 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC3O15379 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC3O15379 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC3O15379 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC3O15379 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC3O15379 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
HDAC3O15379 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.54■□□□□ 0.08
HDAC3O15379 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC3O15379 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC3O15379 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC3O15379 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.54■□□□□ 0.08
HDAC3O15379 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.54■□□□□ 0.08
HDAC3O15379 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC3O15379 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC3O15379 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 AC096734.2-201ENST00000562054 433 ntBASIC15.54■□□□□ 0.08
HDAC3O15379 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 MIR4313-201ENST00000580760 101 ntBASIC15.54■□□□□ 0.08
HDAC3O15379 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC3O15379 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.54■□□□□ 0.08
HDAC3O15379 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC3O15379 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC3O15379 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC3O15379 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC3O15379 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC3O15379 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 PCDHA3-202ENST00000532566 4594 ntBASIC15.53■□□□□ 0.08
HDAC3O15379 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.53■□□□□ 0.08
HDAC3O15379 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 RHOQP3-201ENST00000437982 621 ntBASIC15.53■□□□□ 0.08
HDAC3O15379 AC140658.5-201ENST00000438532 169 ntBASIC15.53■□□□□ 0.08
HDAC3O15379 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 FAM215A-202ENST00000632077 792 ntBASIC15.53■□□□□ 0.08
HDAC3O15379 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
HDAC3O15379 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
HDAC3O15379 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
HDAC3O15379 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.53■□□□□ 0.08
HDAC3O15379 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HDAC3O15379 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HDAC3O15379 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.52■□□□□ 0.08
HDAC3O15379 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
HDAC3O15379 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
HDAC3O15379 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.52■□□□□ 0.08
HDAC3O15379 AL691432.1-201ENST00000596308 1422 ntBASIC15.52■□□□□ 0.08
HDAC3O15379 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
HDAC3O15379 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HDAC3O15379 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.52■□□□□ 0.08
HDAC3O15379 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.52■□□□□ 0.08
HDAC3O15379 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HDAC3O15379 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.52■□□□□ 0.08
HDAC3O15379 HCG4B-203ENST00000450128 991 ntBASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms