Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 AC106881.1-201ENST00000605849 3329 ntBASIC13.62□□□□□ -0.23
SDCBPO00560 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.62□□□□□ -0.23
SDCBPO00560 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.62□□□□□ -0.23
SDCBPO00560 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.62□□□□□ -0.23
SDCBPO00560 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 MIR3909-201ENST00000579518 119 ntBASIC13.62□□□□□ -0.23
SDCBPO00560 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
SDCBPO00560 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.62□□□□□ -0.23
SDCBPO00560 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.62□□□□□ -0.23
SDCBPO00560 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SDCBPO00560 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 HAUS4P1-201ENST00000406739 1145 ntBASIC13.61□□□□□ -0.23
SDCBPO00560 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.61□□□□□ -0.23
SDCBPO00560 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.61□□□□□ -0.23
SDCBPO00560 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.61□□□□□ -0.23
SDCBPO00560 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
SDCBPO00560 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SDCBPO00560 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SDCBPO00560 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SDCBPO00560 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms