Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 REXO1L1P-202ENST00000608646 1974 ntBASIC16.59■□□□□ 0.25
CCDC188H7C350 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 PCDHA3-202ENST00000532566 4594 ntBASIC16.59■□□□□ 0.25
CCDC188H7C350 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 IGLL3P-201ENST00000412472 434 ntBASIC16.59■□□□□ 0.25
CCDC188H7C350 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.59■□□□□ 0.25
CCDC188H7C350 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.59■□□□□ 0.25
CCDC188H7C350 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.59■□□□□ 0.25
CCDC188H7C350 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC188H7C350 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC188H7C350 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.59■□□□□ 0.25
CCDC188H7C350 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC188H7C350 FGD5P1-202ENST00000614866 2498 ntBASIC16.59■□□□□ 0.25
CCDC188H7C350 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 BNIP3P1-202ENST00000550043 1585 ntBASIC16.59■□□□□ 0.25
CCDC188H7C350 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC188H7C350 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC188H7C350 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC188H7C350 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC188H7C350 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC188H7C350 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC188H7C350 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC188H7C350 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC188H7C350 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.58■□□□□ 0.25
CCDC188H7C350 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC188H7C350 UPK3BP1-201ENST00000428678 509 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 RHOQP3-201ENST00000437982 621 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 AC140658.5-201ENST00000438532 169 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 FAM197Y8-203ENST00000450145 560 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC188H7C350 AF186996.4-201ENST00000467186 377 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC188H7C350 AC096734.2-201ENST00000562054 433 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.58■□□□□ 0.24
CCDC188H7C350 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.58■□□□□ 0.24
CCDC188H7C350 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 IFNL4P1-201ENST00000607083 540 ntBASIC16.58■□□□□ 0.24
CCDC188H7C350 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC188H7C350 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC188H7C350 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC188H7C350 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC188H7C350 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC188H7C350 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CCDC188H7C350 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC188H7C350 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CCDC188H7C350 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms