Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
SMKR1H3BMG3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 R3HDM2P2-201ENST00000401880 2116 ntBASIC11.71□□□□□ -0.53
SMKR1H3BMG3 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 ARMC10P1-201ENST00000313754 855 ntBASIC11.71□□□□□ -0.53
SMKR1H3BMG3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 AC026396.1-201ENST00000419388 421 ntBASIC11.71□□□□□ -0.53
SMKR1H3BMG3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 TOB2P1-201ENST00000469761 992 ntBASIC11.71□□□□□ -0.53
SMKR1H3BMG3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 AL160237.2-201ENST00000556165 472 ntBASIC11.71□□□□□ -0.53
SMKR1H3BMG3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 AL121672.3-201ENST00000608644 468 ntBASIC11.71□□□□□ -0.53
SMKR1H3BMG3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SMKR1H3BMG3 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
SMKR1H3BMG3 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 PPIH-202ENST00000372549 327 ntTSL 3 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SMKR1H3BMG3 AL596275.1-201ENST00000423464 877 ntBASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms