Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 AC004945.1-201ENST00000416738 983 ntBASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 CLUHP6-201ENST00000580789 941 ntBASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 MIR3615-201ENST00000581999 87 ntBASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 AL049840.4-201ENST00000602422 811 ntBASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDHGA1Q9Y5H4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 GGT3P-204ENST00000453783 1664 ntBASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDHGA1Q9Y5H4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 GOLGA2P4-201ENST00000441462 777 ntBASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 KRT8P13-201ENST00000463294 1010 ntBASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 RN7SL560P-201ENST00000577943 264 ntBASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AC243960.2-201ENST00000600996 747 ntBASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
PCDHGA1Q9Y5H4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms