Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 MST1L-201ENST00000442552 2185 ntBASIC12.93□□□□□ -0.34
FOXA2Q9Y261 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 MIR600HG-201ENST00000449175 5984 ntBASIC12.93□□□□□ -0.34
FOXA2Q9Y261 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 IGHV3-62-201ENST00000520057 340 ntBASIC12.93□□□□□ -0.34
FOXA2Q9Y261 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 CICP13-201ENST00000422015 2789 ntBASIC12.92□□□□□ -0.34
FOXA2Q9Y261 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC004967.1-201ENST00000453589 447 ntBASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AC079781.4-201ENST00000641908 219 ntBASIC12.92□□□□□ -0.34
FOXA2Q9Y261 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA2Q9Y261 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA2Q9Y261 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms