Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AL627223.1-201ENST00000416693 442 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 RPS8P6-201ENST00000426177 609 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 CNN2P11-201ENST00000429351 262 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 DNAJB3-202ENST00000449667 1266 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AC098859.1-201ENST00000502915 1238 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AL596442.2-201ENST00000610240 980 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AC084121.4-201ENST00000641598 221 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 AF228730.8-201ENST00000642140 221 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TNRC18P2-201ENST00000417666 2714 ntBASIC16.49■□□□□ 0.23
PCDH9Q9HC56 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH9Q9HC56 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AL513477.1-201ENST00000602865 2407 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 KRT18P32-201ENST00000424695 1287 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 SLC25A39P2-201ENST00000537614 270 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC243562.2-201ENST00000561247 970 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC093520.2-201ENST00000561830 333 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC061975.2-201ENST00000581722 295 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC139530.3-201ENST00000620344 690 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC079781.4-201ENST00000641908 219 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 MST1L-201ENST00000442552 2185 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC138035.3-201ENST00000622706 2791 ntBASIC16.48■□□□□ 0.23
PCDH9Q9HC56 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH9Q9HC56 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AC092127.1-201ENST00000567093 3455 ntBASIC16.47■□□□□ 0.23
PCDH9Q9HC56 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms