Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AL662890.1-201ENST00000396818 632 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 ACTG1P2-201ENST00000415776 1125 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 ACTG1P11-201ENST00000425411 1125 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 PTPA-217ENST00000434095 870 ntTSL 2 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AF254983.2-201ENST00000612331 135 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 AP001002.3-201ENST00000623482 206 ntBASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK3Q9BYB0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 RPL17P11-201ENST00000417593 544 ntBASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK3Q9BYB0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 AC018695.7-201ENST00000624587 2492 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 CYP46A4P-201ENST00000414953 267 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 KRTAP19-9P-201ENST00000421795 191 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 FNTAP2-201ENST00000430308 634 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 PTPA-218ENST00000435132 618 ntTSL 2 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 AC126915.1-201ENST00000522847 1038 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 FGFR3P5-201ENST00000564496 886 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 AC004466.1-201ENST00000599515 1080 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 AC008132.1-202ENST00000342005 1389 ntBASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHANK3Q9BYB0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHANK3Q9BYB0 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms