Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL25A1Q9BXS0 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL25A1Q9BXS0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.72■□□□□ 0.11
COL25A1Q9BXS0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.72■□□□□ 0.11
COL25A1Q9BXS0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL25A1Q9BXS0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 TUBB8P12-201ENST00000308911 1335 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 TUBB7P-202ENST00000428444 1305 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 HCG11-201ENST00000411553 5696 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 AL583805.1-201ENST00000391389 531 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 AP000358.1-201ENST00000456260 156 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 CTBP2P6-201ENST00000526402 1229 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 LRRC59-203ENST00000576448 1531 ntBASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL25A1Q9BXS0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
COL25A1Q9BXS0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 MIR4783-201ENST00000580343 82 ntBASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 MIR4313-201ENST00000580760 101 ntBASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AC020922.4-201ENST00000621389 339 ntBASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 AL512652.2-201ENST00000625156 1716 ntBASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 GPAA1P2-202ENST00000606848 1787 ntBASIC15.7■□□□□ 0.1
COL25A1Q9BXS0 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL25A1Q9BXS0 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms