Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14□□□□□ -0.17
NKX3-1Q99801 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14□□□□□ -0.17
NKX3-1Q99801 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14□□□□□ -0.17
NKX3-1Q99801 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14□□□□□ -0.17
NKX3-1Q99801 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14□□□□□ -0.17
NKX3-1Q99801 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
NKX3-1Q99801 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14□□□□□ -0.17
NKX3-1Q99801 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 AC020658.6-201ENST00000623564 1870 ntBASIC13.99□□□□□ -0.17
NKX3-1Q99801 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 IGLL3P-201ENST00000412472 434 ntBASIC13.99□□□□□ -0.17
NKX3-1Q99801 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.99□□□□□ -0.17
NKX3-1Q99801 AC116407.3-201ENST00000623905 1129 ntBASIC13.99□□□□□ -0.17
NKX3-1Q99801 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 AC006486.2-201ENST00000624246 2199 ntBASIC13.99□□□□□ -0.17
NKX3-1Q99801 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.99□□□□□ -0.17
NKX3-1Q99801 CICP24-201ENST00000605464 2705 ntBASIC13.99□□□□□ -0.17
NKX3-1Q99801 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX3-1Q99801 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms