Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 AL158070.2-201ENST00000623713 1621 ntBASIC25.66■■□□□ 1.7
IFT140Q96RY7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC25.66■■□□□ 1.7
IFT140Q96RY7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
IFT140Q96RY7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AC007787.1-201ENST00000588095 1583 ntBASIC25.65■■□□□ 1.7
IFT140Q96RY7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 SNORD3B-2-202ENST00000571722 791 ntBASIC25.65■■□□□ 1.7
IFT140Q96RY7 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
IFT140Q96RY7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC25.65■■□□□ 1.7
IFT140Q96RY7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.7
IFT140Q96RY7 CLUHP2-201ENST00000426660 1303 ntBASIC25.64■■□□□ 1.7
IFT140Q96RY7 AC074138.1-201ENST00000611182 1303 ntBASIC25.64■■□□□ 1.7
IFT140Q96RY7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC25.64■■□□□ 1.7
IFT140Q96RY7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC25.64■■□□□ 1.7
IFT140Q96RY7 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
IFT140Q96RY7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
IFT140Q96RY7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
IFT140Q96RY7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
IFT140Q96RY7 AC005915.1-201ENST00000624912 2018 ntBASIC25.64■■□□□ 1.7
IFT140Q96RY7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
IFT140Q96RY7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
IFT140Q96RY7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
IFT140Q96RY7 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
IFT140Q96RY7 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 HNRNPA1P41-201ENST00000397777 928 ntBASIC25.64■■□□□ 1.69
IFT140Q96RY7 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
IFT140Q96RY7 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC25.64■■□□□ 1.69
IFT140Q96RY7 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
IFT140Q96RY7 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
IFT140Q96RY7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
IFT140Q96RY7 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
IFT140Q96RY7 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 STUB1-204ENST00000564370 875 ntTSL 2 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
IFT140Q96RY7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
IFT140Q96RY7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
IFT140Q96RY7 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms