Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
KRT39Q6A163 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.21■□□□□ 0.34
KRT39Q6A163 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
KRT39Q6A163 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.2■□□□□ 0.34
KRT39Q6A163 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 FO538757.1-201ENST00000623083 1397 ntBASIC17.2■□□□□ 0.34
KRT39Q6A163 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
KRT39Q6A163 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 AL080243.2-201ENST00000418783 582 ntBASIC17.2■□□□□ 0.34
KRT39Q6A163 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.2■□□□□ 0.34
KRT39Q6A163 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.2■□□□□ 0.34
KRT39Q6A163 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.2■□□□□ 0.34
KRT39Q6A163 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.2■□□□□ 0.34
KRT39Q6A163 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.2■□□□□ 0.34
KRT39Q6A163 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
KRT39Q6A163 AC046158.3-201ENST00000624947 2558 ntBASIC17.2■□□□□ 0.34
KRT39Q6A163 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
KRT39Q6A163 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
KRT39Q6A163 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
KRT39Q6A163 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.19■□□□□ 0.34
KRT39Q6A163 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
KRT39Q6A163 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.19■□□□□ 0.34
KRT39Q6A163 RPL37AP1-201ENST00000412502 279 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 AC136604.1-201ENST00000418535 575 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 AC107890.1-201ENST00000422478 521 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 FAM86GP-201ENST00000448322 971 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 AC069120.2-201ENST00000524091 540 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.19■□□□□ 0.34
KRT39Q6A163 AC140878.1-201ENST00000565277 250 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.19■□□□□ 0.34
KRT39Q6A163 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.19■□□□□ 0.34
KRT39Q6A163 AC097359.3-201ENST00000603982 1210 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 SPDYE12P-201ENST00000618416 771 ntBASIC17.19■□□□□ 0.34
KRT39Q6A163 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
KRT39Q6A163 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.19■□□□□ 0.34
KRT39Q6A163 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
KRT39Q6A163 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
KRT39Q6A163 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.19■□□□□ 0.34
KRT39Q6A163 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
KRT39Q6A163 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
KRT39Q6A163 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.18■□□□□ 0.34
KRT39Q6A163 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.18■□□□□ 0.34
KRT39Q6A163 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.18■□□□□ 0.34
KRT39Q6A163 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.18■□□□□ 0.34
KRT39Q6A163 AL138828.2-201ENST00000615812 383 ntBASIC17.18■□□□□ 0.34
KRT39Q6A163 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms