Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC11.34□□□□□ -0.59
RPL39P62891 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 BET1L-202ENST00000332865 533 ntTSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.34□□□□□ -0.59
RPL39P62891 KRT16P4-201ENST00000453883 522 ntBASIC11.34□□□□□ -0.59
RPL39P62891 MSRA-206ENST00000521209 814 ntTSL 3 BASIC11.34□□□□□ -0.59
RPL39P62891 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
RPL39P62891 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
RPL39P62891 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC11.34□□□□□ -0.59
RPL39P62891 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 AC011477.6-201ENST00000604980 1927 ntBASIC11.34□□□□□ -0.59
RPL39P62891 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC11.34□□□□□ -0.59
RPL39P62891 AC012569.1-201ENST00000591191 1524 ntBASIC11.34□□□□□ -0.59
RPL39P62891 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 AGAP7P-201ENST00000582299 2062 ntBASIC11.34□□□□□ -0.59
RPL39P62891 AGAP14-201ENST00000624701 2060 ntBASIC11.34□□□□□ -0.59
RPL39P62891 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.34□□□□□ -0.59
RPL39P62891 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC11.34□□□□□ -0.59
RPL39P62891 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC11.34□□□□□ -0.59
RPL39P62891 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
RPL39P62891 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
RPL39P62891 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.59
RPL39P62891 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.59
RPL39P62891 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
RPL39P62891 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 AC104581.4-201ENST00000623126 3052 ntBASIC11.33□□□□□ -0.6
RPL39P62891 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC11.33□□□□□ -0.6
RPL39P62891 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 AC117489.1-201ENST00000625169 3217 ntBASIC11.33□□□□□ -0.6
RPL39P62891 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC11.33□□□□□ -0.6
RPL39P62891 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC11.33□□□□□ -0.6
RPL39P62891 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC11.33□□□□□ -0.6
RPL39P62891 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC11.33□□□□□ -0.6
RPL39P62891 RNF151-202ENST00000569210 853 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
RPL39P62891 MTDHP3-201ENST00000594186 672 ntBASIC11.33□□□□□ -0.6
RPL39P62891 MTDHP4-201ENST00000600287 670 ntBASIC11.33□□□□□ -0.6
RPL39P62891 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
RPL39P62891 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC11.33□□□□□ -0.6
RPL39P62891 AC066615.1-201ENST00000640911 628 ntBASIC11.33□□□□□ -0.6
RPL39P62891 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
RPL39P62891 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC11.33□□□□□ -0.6
RPL39P62891 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
RPL39P62891 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms