Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
RHBDL3P58872 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RHBDL3P58872 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.64■□□□□ 0.58
RHBDL3P58872 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RHBDL3P58872 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 AC099336.1-201ENST00000417053 1171 ntBASIC18.64■□□□□ 0.57
RHBDL3P58872 KLF2P4-201ENST00000451959 1225 ntBASIC18.64■□□□□ 0.57
RHBDL3P58872 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.64■□□□□ 0.57
RHBDL3P58872 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
RHBDL3P58872 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.64■□□□□ 0.57
RHBDL3P58872 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.64■□□□□ 0.57
RHBDL3P58872 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RHBDL3P58872 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.64■□□□□ 0.57
RHBDL3P58872 GNRHR2-203ENST00000581100 1187 ntBASIC18.64■□□□□ 0.57
RHBDL3P58872 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
RHBDL3P58872 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.64■□□□□ 0.57
RHBDL3P58872 AC093813.1-201ENST00000605066 256 ntBASIC18.64■□□□□ 0.57
RHBDL3P58872 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 AC134312.5-201ENST00000568031 1313 ntBASIC18.64■□□□□ 0.57
RHBDL3P58872 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RHBDL3P58872 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDL3P58872 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.64■□□□□ 0.57
RHBDL3P58872 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.64■□□□□ 0.57
RHBDL3P58872 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.63■□□□□ 0.57
RHBDL3P58872 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
RHBDL3P58872 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RHBDL3P58872 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.63■□□□□ 0.57
RHBDL3P58872 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.63■□□□□ 0.57
RHBDL3P58872 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 RPL7P3-201ENST00000441388 714 ntBASIC18.63■□□□□ 0.57
RHBDL3P58872 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.63■□□□□ 0.57
RHBDL3P58872 FTH1P14-201ENST00000482930 551 ntBASIC18.63■□□□□ 0.57
RHBDL3P58872 AC022137.2-201ENST00000503482 481 ntBASIC18.63■□□□□ 0.57
RHBDL3P58872 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.63■□□□□ 0.57
RHBDL3P58872 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.63■□□□□ 0.57
RHBDL3P58872 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.63■□□□□ 0.57
RHBDL3P58872 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
RHBDL3P58872 AP000812.2-201ENST00000538934 718 ntBASIC18.63■□□□□ 0.57
RHBDL3P58872 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.63■□□□□ 0.57
RHBDL3P58872 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RHBDL3P58872 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.63■□□□□ 0.57
RHBDL3P58872 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.63■□□□□ 0.57
RHBDL3P58872 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.63■□□□□ 0.57
RHBDL3P58872 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RHBDL3P58872 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDL3P58872 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RHBDL3P58872 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 ACKR1-201ENST00000368121 1240 ntBASIC18.62■□□□□ 0.57
RHBDL3P58872 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.62■□□□□ 0.57
RHBDL3P58872 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RHBDL3P58872 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.62■□□□□ 0.57
RHBDL3P58872 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.62■□□□□ 0.57
RHBDL3P58872 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms